Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0456 ATGTACTTCAGCGGCGATCCTTCTACGAGGAAGCGTGTCGATTTGGGAGGTCGCAGTTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACGCGAGTAGAACGCAACCGGCGCTTATGGTTGCGCCAGCAGAACTCTGCTGCACTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGCTGTTGGAACTGAACAGTCTAAGTTGCGAGAGCAGTTTTATAAAGCATATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGCCAgttcctttatttctttaaggCAGAaaatattgatgattttttagTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTTTGTTCAGGATAATGGGGATGTTGTGAAACTTTTTGTGGGGGTGGATTACTCATCCACATGTGCTTTGGTGAACTACCGAGTGAAGCGATTTGCACATGCTTGTATTCGTGCTCTGCATCAGAATAGAAATCAGTTAAAAGATCAGCTTTTATTGACTCCTGAGGAATTGAATGTGTCAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGTAAGATAGTAGAATATCTCTTTCAAAACAATGCAGTTGGCCTAGTCAGAGAGATCATTCTTACAGGAAAGGATAATgcagaaaattatttttccgTCGGCAAGGGATCATCATTGGAGCGTGTGCTTACGGCTGTAATATGTCATGTTGGCCAGAAGCCATGTATCTGTTCACATATTAATCCAAGATATAGCTTTGCATCACAGATCATCACAATTCCTTTCTTGTGGCATCTTTTCCCAAATTTACAACAGATTTTTGCAGCAGAGGACCTGAGCCAATGTTACATTCATCAAATGGCAAAATTTGGGCAAAATCTGATCAATTTGCTACCTAAGGATATATCAAATGAATTTCCGAGCTATGCATGTATGCTTGGAAATATATTAGAAACTGCTGGGATTTCTTTGTCTCATCCTGACCGTTCATTTGATATGGCCATAGACCTTGCAGCTGTCACTACATTTTTGCTGGAGGCACTTCCTTCTGTGAAAACTTCCAATAGTAGAGAAAGGATTTCACCTGTCAATGGTTCAGATTGTGGACCCAATGATAGAGATGTTACAGCTGTTGATGCGGTTTGTGGGTTTTTGTATGTTACCTTAAACAAGCTGCCACTTGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCAACGCTTTGGAATTTTATGAAGCGGTGTCATGAGAACCAAAAATGGTCATCATACCTTTCAAATGATGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTCGATAACGAAGAATTTTATGAGCAGGAGAAACCACTATCACTGAAGGATATTAGAAGTCTCATCGTTATTTTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATACCACATCTGGTAATTCGGTAAAATCTGTTCCAGTTAGTTCAGCTGGTAAGGGGCAGTCTGTTCAGGCCATTCAACAGAGGGTTAGCATTGTAGTTTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCCAGTAACTTCCATGCTGATGGGGTGAATGACTTATTTATCTCTCAGGCTGTAATAGAAAATACACGAgcaaatgaaattttgaaacaGGCCCCTTTCTTGATACCATTTACGAGTAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGATCTCAGGCTGTATTTACTAGAAATCGGTTCAGAATAAAACGAGATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAGATAATCTTCGAGGATTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAAGCTGGAATTGATGGCGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATCCATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGTACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGCATTATAGGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTGGAGGAAGGAACCTACGTGTCACTAATGACAATGTCATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTttcagATACGCCAGCAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAACATGAActtcagCTTTTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATCTGCGGCTGCACACCAACTATGCAGGAGGCTATCAAAGTGAGCATTATGTTATCGAGATGCTTTGGGAAGTTCTCAAAGGCTTTTCACTGGAAAACaggaagaaatttttgaaGTTCGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCTTCTGGTAATGCCTCTGAGGAATCACTTGACCGATTACCGACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACCAGTAAGGAGCAATTGGAAACCAAATTACTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGCTAA 2943 0.3959 MYFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAALKIQKCFRGRKAVGTEQSKLREQFYKAYGKYCQNVDRNSFGPDSDFLCQFLYFFKAENIDDFLVLVQICRLLWWFVQDNGDVVKLFVGVDYSSTCALVNYRVKRFAHACIRALHQNRNQLKDQLLLTPEELNVSAIPLLEVLVLLIDPKLPWSCKIVEYLFQNNAVGLVREIILTGKDNAENYFSVGKGSSLERVLTAVICHVGQKPCICSHINPRYSFASQIITIPFLWHLFPNLQQIFAAEDLSQCYIHQMAKFGQNLINLLPKDISNEFPSYACMLGNILETAGISLSHPDRSFDMAIDLAAVTTFLLEALPSVKTSNSRERISPVNGSDCGPNDRDVTAVDAVCGFLYVTLNKLPLERIMTVLAYRTELVPTLWNFMKRCHENQKWSSYLSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIVILRQVLWQLLWVNHTTSGNSVKSVPVSSAGKGQSVQAIQQRVSIVVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFISQAVIENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGSQAVFTRNRFRIKRDHILEDAYNQMSQLTEDNLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYRGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNDNVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRLHTNYAGGYQSEHYVIEMLWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQRASGNASEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0456 980 Gene3D Hect, E3 ligase catalytic domain 744 823 - -
Ssu6g0456 980 Gene3D Hect, E3 ligase catalytic domains 620 858 - -
Ssu6g0456 980 Pfam HECT-domain (ubiquitin-transferase) 675 980 IPR000569 GO:0004842
Ssu6g0456 980 SMART hect_3 637 980 IPR000569 GO:0004842
Ssu6g0456 980 Gene3D Hect, E3 ligase catalytic domain 862 979 - -
Ssu6g0456 980 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 386 980 IPR044611 GO:0000209|GO:0061630
Ssu6g0456 980 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 377 IPR044611 GO:0000209|GO:0061630
Ssu6g0456 980 CDD HECTc 618 978 IPR000569 GO:0004842
Ssu6g0456 980 ProSiteProfiles HECT domain profile. 639 980 IPR000569 GO:0004842
Ssu6g0456 980 SUPERFAMILY Hect, E3 ligase catalytic domain 608 972 IPR035983 GO:0004842
Ssu6g0456 980 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Ssu6g0456 980 PANTHER BNAC01G43970D PROTEIN 386 980 - -
Ssu6g0456 980 PANTHER BNAC01G43970D PROTEIN 1 377 - -
Ssu6g0456 980 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0456 Ssu-Chr6 7146544 7165280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0456 K10589 - gmx:100789933 1811.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0456 6 7146544 7165280 Ssu6g0456 6 7146544 7165280 ECH
Ssu6g0456 6 7146544 7165280 Ssu1g1184 1 25949703 26003981 PCT