Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1184 ATGTACTTCAGCGGCGATTCCTCTACTCGTAAGCGTGTTGATTTAGGTGGTCGCAGCTCGAAGGAGAGGGACAGAAAGAATCTTCTAGAACAGACGCGATTGGAGCGGAACCGGCGCTTGGGGCAGCGCCAGCAGAACTCTGCTGCACTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAGTCTAGACTGCGAGAGAAATTCCTAAGAATCTATGGGAAGAACTGCTGGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGCCGGTTCCTCTATTTCTTCAATGCAGAaaatattgatgattttttaattcttgtgcAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGAGTGGGGATGTTGTGAGACTTTTTGCTGGTGTGGATTACTCATCCAAGTGTGCTTTGGTGAACTACCGGGTGAAGCAATTTGTATATACTTGTATTCGTGCCGTCCATCAGAATAGAAATCAATTGAAGGATCAGCTTTTATTGACTCCGAAGGAATCTAATGCATCAGCTATTCCTTTATTGGAAGTCTTGGTATTGTTGATAGATCCTGAACTGCCATGGAGCTGTAAGATAGTAGGATCTCTGTCTCAAAACAATGCATTTGGCCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAAGGATCATCATTGGAGCGTGTGCTTACTGTTGTAATGTGTCACATTGGTCAGAAGCCATGTATCTGTTCACATACTGATCCAGCATATAGCTTCTCATCACAAATCATTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAACAGGTATTTGCAAAACGGGGCCTGAGCCAACATTACATTCATCAAATGGCTACATGTGTGCCAAATCTGATTAATTATCTACCTAAGGATATGTCTGATGAATTTCCTACCTACGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAATTGCTTTGTCTCGACCTGACTGTTCCTTTGATATGgCCATAGACCTTGCTGCTGTTACTACGTTTTTGCTGGAATCGCACCCTTCTCTGACAAGATCTGATGGTAGAGAGAATTCTACAATTGCTGAGGATGAAATGACTGGGGAAGATGAAGTCATGGAAGTAGCTTTGGATAGGAAATTGAATCAACAAATTTGTAATGCTATAGATACTCGCTTCCTTTTGCAACTGatgaatatattatttagagaTTTTTCATCTGCCAACGGTTCAGATTATGAGCCAGATAACAGGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTCTATTTGTTATCTTCAACACATTGCCACTTGAAAAGATTATGACTGTGCTTGCCTACAGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAATAAAAAATGGTCATCTTTGTCTGCACGATTATCATACCTCTCAGGTGATGCACCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGAAACCTTATAATTCTGTTAAAGCAGGCTCTGTGGCAGCTATTGTGGGTGAATCATACCACATCTGCTAATTTGGTTAAATCTGCTCCAGTTAGCACAGCTAGTAAAAAGCAGTCTGAAGCCATTCAACAGAGGGTTAGCATTGTAGTTTCTGAGCTCCTGTCCCAGCTGCAAGACTGGAACAACAGACGACAGTTTACACCCCCCAGTGTCTTCCACGCTGATGGAGTGAATGACTTCTTTATCTCTCAGGCTGTTATAGAAAATACACGAGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATTTTCACTTCTCAACTAGCTGCTGCTAGGCAAAGACATGGATCTCAGGCTGTTTTTACAAGAAACCGGTTCAGAATACGACGGAATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGATCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCGTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATCTccaatttttccattttcttggtACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCCTGGACCCAGAATTATATCGTCATCTTATCTTTCTAAAGCATTATGAGGGTGACATTTCGGAGTTGGaactatattttgttattgtaaaCAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTTCGTGTCACTAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCACCGCTTGAATTTTCAGatACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTTTGATATCAGGTTCACTTGACAGCTTGGATGTTGACGATTTGCGGCTGCATACAAACTATGCAGGAGGCTATCATAGTGAGCATTATGTTATTGAGATATTCTGGGAAGTTCTCAAAGGCTTTTCAAtagaaaacaagaagaaatttttgaaGTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTCGTTTTGCATACAAAGGGCCGGTGGTAATGCATCGGAGGAAGCTCTTGACCGATTACCAACATCAGCTACTTGTATGAATCTACTAAAGCTTCCACCTTATAAAAGTAAAGAGCAACTGGAAACCAAATTACTGTATGCCATAAATGCTGATGCTGGCTTTGATTTGAGTTAA 3096 0.3941 MYFSGDSSTRKRVDLGGRSSKERDRKNLLEQTRLERNRRLGQRQQNSAALRIQKCFRGRKVVRTEQSRLREKFLRIYGKNCWNLDRNAFGPDSDFLRRFLYFFNAENIDDFLILVQICRLLQQFVQESGDVVRLFAGVDYSSKCALVNYRVKQFVYTCIRAVHQNRNQLKDQLLLTPKESNASAIPLLEVLVLLIDPELPWSCKIVGSLSQNNAFGLLREIILTGKDNAENCIYSEKGSSLERVLTVVMCHIGQKPCICSHTDPAYSFSSQIITIPFLWHVFPNLKQVFAKRGLSQHYIHQMATCVPNLINYLPKDMSDEFPTYACLLGNILETGGIALSRPDCSFDMAIDLAAVTTFLLESHPSLTRSDGRENSTIAEDEMTGEDEVMEVALDRKLNQQICNAIDTRFLLQLMNILFRDFSSANGSDYEPDNREVAAVGAVCGFLFVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENKKWSSLSARLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRNLIILLKQALWQLLWVNHTTSANLVKSAPVSTASKKQSEAIQQRVSIVVSELLSQLQDWNNRRQFTPPSVFHADGVNDFFISQAVIENTRANEILKQAAFLIPFTSRVKIFTSQLAAARQRHGSQAVFTRNRFRIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYEGDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRLHTNYAGGYHSEHYVIEIFWEVLKGFSIENKKKFLKFVTGCSRGPLLGFQYLEPSFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1184 1031 Pfam HECT-domain (ubiquitin-transferase) 726 1031 IPR000569 GO:0004842
Ssu1g1184 1031 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1031 IPR044611 GO:0000209|GO:0061630
Ssu1g1184 1031 ProSiteProfiles HECT domain profile. 690 1031 IPR000569 GO:0004842
Ssu1g1184 1031 PANTHER BNAC01G43970D PROTEIN 1 1031 - -
Ssu1g1184 1031 Gene3D Hect, E3 ligase catalytic domains 671 909 - -
Ssu1g1184 1031 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g1184 1031 Gene3D Hect, E3 ligase catalytic domain 795 874 - -
Ssu1g1184 1031 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Ssu1g1184 1031 CDD HECTc 669 1029 IPR000569 GO:0004842
Ssu1g1184 1031 SUPERFAMILY Hect, E3 ligase catalytic domain 660 1023 IPR035983 GO:0004842
Ssu1g1184 1031 SMART hect_3 688 1031 IPR000569 GO:0004842
Ssu1g1184 1031 Gene3D Hect, E3 ligase catalytic domain 913 1030 - -
Ssu1g1184 1031 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1184 Ssu-Chr1 25949703 26003981 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1184 K10589 - gmx:100787467 1910.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1184 1 25949703 26003981 Ssu1g1184 1 25949703 26003981 ECH
Ssu6g0456 6 7146544 7165280 Ssu1g1184 1 25949703 26003981 PCT