Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0452 ATGGTGTTGGCTTCCCCAAACCCAATAAGGAGCGAAGGAATCTTACCCAGTGGCAGTGAGCTTCCCGTTGTGGACCTCACCGCCGAAAGGTCAGAAGCGACAAAGCTCATTGTGAAAGCGTGTGAAGAGTACGGTTTCTTCAAAGTCATCAACCACGGTATCAGCCACGAAGTCATAGCCAAAACGGAAGAAGCAGGGTTCGGTTTCTTTGCCAAACCGGTGACGCAAAAGAAACTGGCCACACCTGCTTATGGCTGCAAGAACATAGGCTTAAATGGAGACATGGGTGAGGTGGAGTACCTTCTCCTCAGTGCTACCACTCACTCCATTGCTCAGATATCCAAAAGTATATCCCCTGACCCATTAAACATCAGCTCTACTTTGGGTGCATACACAGAGGCAGTGAGGGAGCTGGCATGTGAGATTTTGGAGCTAATGGCAGAGGGCCTGGGGGTCCTGGATAAATTGGTTTTCAGCAGGTTGATAAGGGATGTTGATAGTGACTCAGTCCTGAGGCTCAATCACTACCCACCTATAATTAACAGAGACTCCAAGGACAAGTCGCAATATAGCAAAGTTGGGTTTGGGGAGCATTCTGACCCTCAGATCCTAACCATTCTTAGATCCAACGACGTGGGTGGCCTCCAAATCTCGCTTCAAGATGGGGTGTGGATCCCAGTCACCCCTGACCCATCAGCTTTCTATGTGAACGTGGGTGATGTACTAGAGGTTTTGACAAATGGAAGATTTGTAAGCGTGAGACACAGGGCTATGACCAACTCATACAAGTCTAGAATGTCAGTGGCATATTTTGGGGCTCCACCCCTGCATGCTAGCATTGTTGCTCCCCCAGTTATGGTTACACCCCAGAGGCCCTCTCTCTTCCGACCATTCACTTGGGCCGACTACAAGAAAGCCACTTACTCTCTCAGACTTGGAGACAGCCGCATTGAACTTTTTAGAAAGTGCAAAGAAGCTCATGAGCACTGA 990 0.4899 MVLASPNPIRSEGILPSGSELPVVDLTAERSEATKLIVKACEEYGFFKVINHGISHEVIAKTEEAGFGFFAKPVTQKKLATPAYGCKNIGLNGDMGEVEYLLLSATTHSIAQISKSISPDPLNISSTLGAYTEAVRELACEILELMAEGLGVLDKLVFSRLIRDVDSDSVLRLNHYPPIINRDSKDKSQYSKVGFGEHSDPQILTILRSNDVGGLQISLQDGVWIPVTPDPSAFYVNVGDVLEVLTNGRFVSVRHRAMTNSYKSRMSVAYFGAPPLHASIVAPPVMVTPQRPSLFRPFTWADYKKATYSLRLGDSRIELFRKCKEAHEH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0452 329 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 79 IPR026992 -
Ssu6g0452 329 PANTHER PLANT GIBBERELLIN 2-OXIDASE 3 322 - -
Ssu6g0452 329 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 322 - -
Ssu6g0452 329 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 166 274 IPR005123 -
Ssu6g0452 329 Pfam 2OG-Fe(II) oxygenase superfamily 168 272 IPR044861 -
Ssu6g0452 329 Gene3D - 7 311 IPR027443 -
Ssu6g0452 329 SUPERFAMILY Clavaminate synthase-like 16 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0452 Ssu-Chr6 7048893 7056202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0452 17 321 Glycosyltransferase AT5G59530 28.875 4.04e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0452 K04125 - gmx:100783917 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0452 6 7048893 7056202 Ssu6g0452 6 7048893 7056202 ECH
Ssu6g0452 6 7048893 7056202 Ssu1g1186 1 26230191 26235758 PCT