Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1186 ATGGTGGTGGCTTCCCCAAACTCGATAAGCGAGAAGATTTTACCCATCGACCTTCCCGTGGTGGACCTATCCTCGGAAAGATCGATGGTGACAAAACTCATCGTGAAAGCTTGTGAGGAGTACGGTTTCTTCAACGTGATTAACCATGGTGTCCCTCGTGACACCATAACCAAAATAGAAGAAGCATGTTTTGATTTCTTTGCCAAACCACTGGCCCAAAAGAAACAGGTTGCGCTTTATGGCTCCAAGAACATAGGCTTCAATGGAGACATGGGTGAGGTCGAGTACCTTCTCCTCAGTGCTACTCCTCTCTCTATTGCTCACTTCAAAAACATCTCCAATGTGCCATCAAACTTCAGCTCTGCTGTGAGTGCATACAGAGATGGTGTGAGGGAGCTGGCATGTGAGATTTTGGAGCTAATGGCAGAGGGTCTGGGGGTCCCGGATACATGGGTTTTCAGTAGGTTGATCAGGGAGGTTGATAGTGACTCAGTCCTAAGGTTCAATCACTACCCACCTATACTTAACAAAGACTGCAAGGATAAGGACAAGTCGCCCTCCCACAACCATGCCAAGGTTGGCTTTGGGGAGCATTCTGACCCTCAGATCCTCACCATCCTCAGATCCAACGATGTGGGCGGCCTCCAAATCTCTCTTCAAGATGGGGTGTGGAACCCAGTCACTCCTGACCCCTCAGCTTTCTGTGTTAATGTGGGTATGACAAATGGAAGATTTGTGAGCGTGAGACACAGGGCTGTGACCAACTCATACAAGTCTAGAATGTCGGTGGCATATTTTGGGGCTCCACCACTTGATGCCTGCATTGTTGCTCCCCCAGTTATGGTTACACCCCAGAGGCCCTCCCTCTTCAAACCATTCACTTGGGCTGAATACAAGAAAGTCACCTACTCTCTGAGGCTCGGAGAACGCCGCATTGACCTTTTCAGGAAGTGCACACAAGTAGAGTAA 969 0.4902 MVVASPNSISEKILPIDLPVVDLSSERSMVTKLIVKACEEYGFFNVINHGVPRDTITKIEEACFDFFAKPLAQKKQVALYGSKNIGFNGDMGEVEYLLLSATPLSIAHFKNISNVPSNFSSAVSAYRDGVRELACEILELMAEGLGVPDTWVFSRLIREVDSDSVLRFNHYPPILNKDCKDKDKSPSHNHAKVGFGEHSDPQILTILRSNDVGGLQISLQDGVWNPVTPDPSAFCVNVGMTNGRFVSVRHRAVTNSYKSRMSVAYFGAPPLDACIVAPPVMVTPQRPSLFKPFTWAEYKKVTYSLRLGERRIDLFRKCTQVE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1186 322 Pfam 2OG-Fe(II) oxygenase superfamily 163 267 IPR044861 -
Ssu1g1186 322 PRINTS Isopenicillin N synthase signature 34 51 - -
Ssu1g1186 322 PRINTS Isopenicillin N synthase signature 198 219 - -
Ssu1g1186 322 Pfam non-haem dioxygenase in morphine synthesis N-terminal 18 79 IPR026992 -
Ssu1g1186 322 Gene3D - 3 305 IPR027443 -
Ssu1g1186 322 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 317 - -
Ssu1g1186 322 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 161 269 IPR005123 -
Ssu1g1186 322 SUPERFAMILY Clavaminate synthase-like 15 308 - -
Ssu1g1186 322 PANTHER PLANT GIBBERELLIN 2-OXIDASE 3 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1186 Ssu-Chr1 26230191 26235758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1186 16 316 Glycosyltransferase AT5G59530 28.701 7.77e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1186 K04125 - gmx:100811043 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1186 1 26230191 26235758 Ssu1g1186 1 26230191 26235758 ECH
Ssu6g0452 6 7048893 7056202 Ssu1g1186 1 26230191 26235758 PCT