Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0420 ATGGCATTGATTTTGGAACACCCACGGGGAGGTCAGGAATTGGGTATCGGTTTCACCCCACCGTATTTGGCACCCTCCACAGTTGGACCAGTGGTTCTGAAAGGCGTCAATTATGCCTCTGGTGGAGGTGGAATTCTCAATCTCACTGGAAGAGTCTTTGGTGGTCGACTCAACTTCGATGCACAGATTGACAATTTTGCAAATACCAGGCAAGACATCATATCCAGCATTGGTGTTCCTGCGGCTCTTAATCTATTCAAAAGGGCATTGTTTTCCGTGACAATAGGCTCAAACGATTTCATAAATAACTACTTAACACCAGAACTCACATTTTCCGACCAGAAAGCGGCGTCTCCTGAACTATTTGTTACCACCATGATATCAAAACTCAGAGTTCAGCTCActAGGTTATTCAATCTGGGAGCTAGAAAAATTGTTGTGGCAAATGTGGGGCCTATTGGGTGTATACCAAGTCAGAGGGATGCAAACCCAGGTGCAGGAGATAGTTGTGTTGCTTTCCCCAATCAGCTAGCACAGCTTTTTAACACCGAGTTAAAGGGCCTCATTGCAGAACTAAACTCAAATCTGGAGGGTTCGGAGTTTGTTTATGCAGATGTCTACCAAATTTTAGAAGATATTCTCCAGAATTACGTAGCACTTGGTTTTGATAATCCGTCTTCCGCTTGCTGTCACGTGGCTGGGCGCTTCGGAGGTCTGCTCCCATGTAGTCCCACATCGAAAGTTTGCTGGGATCGACCCAAGTACGTGTTCTGGGATCCTTACCATCCTTCTGATGCTGCAAATGTTATCATCGCTAAGCGCCTCTTAGATGGTAGTTCAAACGATATTTCTCCAGTGAACATTCGCCGACTctttcaatcataa 885 0.4486 MALILEHPRGGQELGIGFTPPYLAPSTVGPVVLKGVNYASGGGGILNLTGRVFGGRLNFDAQIDNFANTRQDIISSIGVPAALNLFKRALFSVTIGSNDFINNYLTPELTFSDQKAASPELFVTTMISKLRVQLTRLFNLGARKIVVANVGPIGCIPSQRDANPGAGDSCVAFPNQLAQLFNTELKGLIAELNSNLEGSEFVYADVYQILEDILQNYVALGFDNPSSACCHVAGRFGGLLPCSPTSKVCWDRPKYVFWDPYHPSDAANVIIAKRLLDGSSNDISPVNIRRLFQS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0420 294 CDD SGNH_plant_lipase_like 11 279 IPR035669 -
Ssu6g0420 294 Pfam GDSL-like Lipase/Acylhydrolase 26 274 IPR001087 GO:0016788
Ssu6g0420 294 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 11 293 - -
Ssu6g0420 294 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 11 293 - -
Ssu6g0420 294 SUPERFAMILY SGNH hydrolase 81 277 - -
Ssu6g0420 294 Gene3D SGNH hydrolase 7 281 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0420 Ssu-Chr6 6512584 6513921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0420 11 294 Acyl Lipid Metabolism Gene Families AT4G10950 33.217 2.22e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0420 - - gmx:100809250 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0420 6 6512584 6513921 Ssu6g0420 6 6512584 6513921 ECH
Ssu6g0420 6 6512584 6513921 Ssu1g1215 1 26986098 26987883 PCT