Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0416 atggaaggtgcagagGAAGGAGTGGAGAGGGTTGTGGACTCGAAGGACTTGCAGCAGCAGACCAAGGCGGAGAAAGAATTAGCTGCTGTTAAGATAAATGCCGCCGATGTTGACATTATCGCAAATGAACCAGAGCTGGATAAAAAGATAGTTGAAAGGACCGTGCGTGAGCATAAAGGTGATGCCGTTGCTGCAATCCAGCACTTGCTTCGCTGGAGTTGTGGGAATGGAAGTGCCAATGTTTAA 246 0.4512 MEGAEEGVERVVDSKDLQQQTKAEKELAAVKINAADVDIIANEPELDKKIVERTVREHKGDAVAAIQHLLRWSCGNGSANV 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0416 81 PANTHER BNAA05G30770D PROTEIN 24 71 - -
Ssu6g0416 81 Pfam HYPK UBA domain 30 70 IPR044034 -
Ssu6g0416 81 CDD UBA_HYPK 30 70 IPR038922 -
Ssu6g0416 81 PANTHER HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER 24 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0416 Ssu-Chr6 6451256 6451903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0416 - - gmx:100789285 106.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0416 6 6451256 6451903 Ssu1g1218 1 27012303 27015292 PCT