Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1218 ATGGAGGGTGGAGAGGAAGGAGTGGAGATGGTGGTGGATTCGAAGGACTTACAGCAACAGAGCAAAGCGTTGGACAAGCTCACCGACCGCGTCGAGGATCGCCAACTCGATTCCACTCGCGTCCAAGAGGCCATGGCTTCCATCGCTGCTTCTGCCGAAGCTGATCGCAATGCCATGCGCATCAGGGAGAAAGAATTAGCTGCTGTTAAAATAAATGCAGCGGACGTTGATATAATTGCTAATGAACTAGAGTTGGACAAAAAGGTTGCTGAAAGAACTTTGCGTGAGCATAAAGGTGATGCAGTTGCTGCCATTCGGCACTTGCTTCACTAG 333 0.5015 MEGGEEGVEMVVDSKDLQQQSKALDKLTDRVEDRQLDSTRVQEAMASIAASAEADRNAMRIREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRHLLH 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1218 110 Coils Coil 17 37 - -
Ssu1g1218 110 CDD UBA_HYPK 69 109 IPR038922 -
Ssu1g1218 110 PANTHER BNAA05G30770D PROTEIN 1 109 - -
Ssu1g1218 110 Coils Coil 80 100 - -
Ssu1g1218 110 Pfam HYPK UBA domain 69 109 IPR044034 -
Ssu1g1218 110 PANTHER HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER 1 109 - -
Ssu1g1218 110 Gene3D - 70 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1218 Ssu-Chr1 27012303 27015292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1218 - - gmx:100527445 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1218 1 27012303 27015292 Ssu1g1218 1 27012303 27015292 ECH
Ssu6g0416 6 6451256 6451903 Ssu1g1218 1 27012303 27015292 PCT