Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0413 ATGGAGTCTGCTCAAGCAAAGAATCAGGCTCTAAGAGAGGCTGGAGCTGTTGGTCCCACTTCATATGAAGCTTTTGAAGCTGCAATAAAGGAAACATTTGACAAATTGGTTGATGAAGGGAAGATCACGCCTGTTAAAGAGTTTACTCCTCCACCAATCCCTGAGGACCTTAACACTGCAATTAGGAGTGGAAAAGTACGTGCTCCAACTCACATTATTTCCACCATCTCTGATGACAGAGGTGAGGAGCCATGCTATGGTGGTGTACCAATGTCTTCCATTATTGAAAATGGTTATGGTGTGGGTGATGTTATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCTCGTTACTGTACTCAGTTTATTGAGATATGTATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGGGCTGGGAAGGACCTTGTCTCCTGTCTTGTATCAGGTTTGCTTACAATTGGTCCCCGATTTGGAGGTGCCATTGATGATGCTGCTCGCTATTTCAAGGATGCTTATGATAGGAGTCTTACACCTTATGAATTTGTTGAAAGTATGAAGAAGAAGGGCATCCGTGTTCCAGGAATAGGGCACAGAATCAAGAATAGGGATAACAAAGATAAGAGAGTCGAGCTGTTACAAAAGTTTGCACGCACGCATTTTCCATCTGTGAAATACATGGAATATGCTGTTGAAGTTGAAAACTACACCCTCACCAAGGCAAATAACTTAGTTCTAAACGTAGACGGTGCAATCGGGTCACTTTTCTTGGATCTTCTTGCTGGTAGCGGAATGTTCACCAAACAAGAGGTTGATGAAATCGTGGAGATTGGCTATCTGAATGGGCTTTTTGTTCTGGCACGCTCCATTGGTCTGATTGGgCATACTTTTGACCAAAAGAGATTGAAACAACCACTCTACCGCCACCCATGGGAGGATGTTTTGTACACAAAATGA 984 0.4329 MESAQAKNQALREAGAVGPTSYEAFEAAIKETFDKLVDEGKITPVKEFTPPPIPEDLNTAIRSGKVRAPTHIISTISDDRGEEPCYGGVPMSSIIENGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNSIVTARAGKDLVSCLVSGLLTIGPRFGGAIDDAARYFKDAYDRSLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVEVENYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEVDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0413 327 PANTHER ATP-CITRATE SYNTHASE 1 327 - -
Ssu6g0413 327 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 327 - -
Ssu6g0413 327 Pfam Citrate synthase, C-terminal domain 118 317 IPR002020 GO:0046912
Ssu6g0413 327 SUPERFAMILY Citrate synthase 46 324 IPR036969 GO:0046912
Ssu6g0413 327 Gene3D - 169 266 IPR016143 -
Ssu6g0413 327 CDD CCL_ACL-C 88 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0413 Ssu-Chr6 6421972 6423932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0413 1 327 Acyl Lipid Metabolism Gene Families AT3G06650 89.602 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0413 K01648 - gmx:100801407 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0413 6 6421972 6423932 Ssu6g0413 6 6421972 6423932 ECH
Ssu6g0413 6 6421972 6423932 Ssu1g1223 1 27075265 27080388 PCT