Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1223 ATGGCCACTGGACAATTATTCTCCCGCACTACACAAGCTCTATTTTACAACTACAAGCAACTTCCAATCCAGCGGATGCTTGATTTTGACTTCCTTTGTGGCAGGGAAACACCATCAGTTGCTGGAATAATTAACCCTGGCTCTGAGGGATTTCAGAAACTCTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATTCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTCGCTTCATTTAGAAGTGCTGCTGCATCATCCATGGCTGCTTTGAAGCAGCCAACAATTAGAGTTGCTGCTATTATTGCTGAAGGAGTACCTGAGTCAGACACTAAGCAATTGATTGCATATGCCCGGGCAAACAATAAGGTTGTTATTGGCCCTGCCACTGTTGGAGGCATCCAAGCAGGTGCTTTTAAAATTGGTGACACGGCTGGaacaattgacaatataattcACTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCCGGTGGGATGTCCAATGAATTATACAACACTATTGCCCGCGTAACTGATGGGATTTATGAAGGAATTGCCATTGGAGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATGCCACagGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCATGATGAGTATTCCTTAGTGGAAGCCCTAAAACAAGGGAAAGTATCAAAACCAGTTGTTGCCTGGGTTAGTGGGACATGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCTAAAAGTGGTGGTGAGTTGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGATGCTGGAGCTGTTGTTCCCACATCATATGAAGCTTTGGAAGCTGCAATGAAGGAAACATTTGACAAATTGGTTGAAGAAGGGAAGATCACACCAGTCAAGGAAATCACTCCTCCACCAATCCCTGAGGACCTTAACTCTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACTATTTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTATTGAAAAGGGTTATGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGCAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGCATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGACCTAGTTTCCAGTCTTGTAGCAGGTTTGCTTACCATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGGGCTTACGCCTTATGAGTTTGTTGAAGGTATGAAGAAGAAGGGAATTCGTGTGCCGGGAATAGGGCACAGGATCAAGAATAGGGACAACAAAGATAAGAGAGTTGAGCTGCTACAAAAGTTTGCACGCACGCATTTTCCTTCCGTGAAATACATGGAATATGCTGTTCAAGTCGAAACCTATACCCTCTCAAAGGcaaataatttagttcttaacgTAGATGGTGCAATCGGATCTCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTTACCAAGCAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGCCTCTTTGTGTTGGCACGCTCTATTGGTCTGATTGGgCACACCTTTGACCAAAAGCGATTGAAGCAACCGCTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGA 1827 0.4373 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVAAIIAEGVPESDTKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNMPQVKMMVVLGELGGHDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALRDAGAVVPTSYEALEAAMKETFDKLVEEGKITPVKEITPPPIPEDLNSAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVAGLLTIGPRFGGAIDDAARYFKDAHDRGLTPYEFVEGMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1223 608 Gene3D - 2 137 - -
Ssu1g1223 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Ssu1g1223 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Ssu1g1223 608 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 608 - -
Ssu1g1223 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0046912
Ssu1g1223 608 PANTHER ATP-CITRATE SYNTHASE 1 608 - -
Ssu1g1223 608 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Ssu1g1223 608 Gene3D - 451 552 IPR016143 -
Ssu1g1223 608 CDD CCL_ACL-C 369 606 - -
Ssu1g1223 608 Gene3D Citrate Synthase, domain 1 400 598 IPR016142 -
Ssu1g1223 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
Ssu1g1223 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Ssu1g1223 608 Gene3D - 138 323 IPR016102 -
Ssu1g1223 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1223 Ssu-Chr1 27075265 27080388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1223 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 93.586 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1223 K01648 - gmx:100795745 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1223 1 27075265 27080388 Ssu1g1223 1 27075265 27080388 ECH
Ssu6g0413 6 6421972 6423932 Ssu1g1223 1 27075265 27080388 PCT