Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0389 ATGCactcctctctttctctctcgtTCTCCgccacctcctcctccgccgccaCCGTCTCCAGATCACGCCACTCCTTCCACGTCCCCGCCTCCGCGCCGCTCAATCTCCGCTTCTGCGGCTTGCGGCGTGAGACACTTGGCTCAGGTCTCGCCGCTTCTCTCAGCCGCCGCCACTCCCACCTCCCTCGCCGCCCTCACTCCGCTGCGCTCTCCGACAATGGCAGCCCTCCCAAATCCTTCGACTACGACTTGCTGATTATCGGCGCTGGCGTTGGAGGCCACGGCGCCGCGCTGCATGCCGTCGAGAAGGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACAGAGGCTGTGTTCCTTCGAAAGCTCTTTTGGCCGTGAGTGGTCGTATGCGAGAACTAAAGAGCGATCATCACTTGAAGTCCTTCGGGTTACAGGTTTCTGCTGCTGGGTATGACAGACAAGGAGTCGCTGATCATGCTAATAATCTTGCTTTGAAAATCCGTAATAATTTGACCAACTCAATGAAAGCACTTGGAGTAGACATACTTTCTGGTTTTGGAGCTATTTTGGGTCCTCAAAAGGTGAAAGTTGGCTCTTCAAACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCTTTTGTTCCTACGGGCATCGAAATTGATGGGAAGTCTGTGATTACCAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGCTATATTGGCCTTGAATTCAGTGATGTATATACAGCACTTGGAAGCGAGGTTACTTTTATAGAAGCTTTAGATCAACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAGTATTGACTATCATACTGGAGTTTTTGCAACCAAGATCACGCCTGCAAGGGATGGAAAACCTGTATTGATTGAACTTATTGATGCAAAAACCAAGGAGCCGAAAGACACTCTGGAGGTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACGCAAGGACTTGGATTGGAGAATATTGATGTGGTAACACAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGCGAGTAATTGATGCTAATGGAAAGCTGGACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGGTTAAAGCACAAGCTTCTAGCCCAGGACTTCCAAAATATTATGCATCTTCAGGAGGAAGACACGAACACATTCAGAATCCTGTAAAAGAGGGGAACCGTTTGAGGGAGATCAATAATGGCCTGATAATGGATAACCGCCGAAGATTACATATACTGGTCCGCGACACAATTCTCAACTATGacatttaa 1431 0.4577 MHSSLSLSFSATSSSAATVSRSRHSFHVPASAPLNLRFCGLRRETLGSGLAASLSRRHSHLPRRPHSAALSDNGSPPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSFGLQVSAAGYDRQGVADHANNLALKIRNNLTNSMKALGVDILSGFGAILGPQKVKVGSSNKIVTAKDIIIATGSVPFVPTGIEIDGKSVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRSIDYHTGVFATKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVIDANGKLDIKFAVHAHPTLSEVLDELFKSAKVKAQASSPGLPKYYASSGGRHEHIQNPVKEGNRLREINNGLIMDNRRRLHILVRDTILNYDI 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0389 476 PRINTS Pyridine nucleotide disulphide reductase class-I signature 115 130 - -
Ssu6g0389 476 PRINTS Pyridine nucleotide disulphide reductase class-I signature 83 105 - -
Ssu6g0389 476 PRINTS Pyridine nucleotide disulphide reductase class-I signature 216 225 - -
Ssu6g0389 476 PRINTS Pyridine nucleotide disulphide reductase class-I signature 346 360 - -
Ssu6g0389 476 PRINTS Pyridine nucleotide disulphide reductase class-I signature 252 277 - -
Ssu6g0389 476 PANTHER DISULFIDE OXIDOREDUCTASE 22 387 - -
Ssu6g0389 476 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 116 126 IPR012999 GO:0016668
Ssu6g0389 476 Gene3D - 82 383 IPR036188 -
Ssu6g0389 476 PANTHER DISULFIDE OXIDOREDUCTASE 391 422 - -
Ssu6g0389 476 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 22 387 - -
Ssu6g0389 476 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 391 422 - -
Ssu6g0389 476 MobiDBLite consensus disorder prediction 56 75 - -
Ssu6g0389 476 SUPERFAMILY FAD/NAD(P)-binding domain 263 385 IPR036188 -
Ssu6g0389 476 Gene3D - 225 352 IPR036188 -
Ssu6g0389 476 PRINTS FAD-dependent pyridine nucleotide reductase signature 345 361 - -
Ssu6g0389 476 PRINTS FAD-dependent pyridine nucleotide reductase signature 213 231 - -
Ssu6g0389 476 PRINTS FAD-dependent pyridine nucleotide reductase signature 84 103 - -
Ssu6g0389 476 PRINTS FAD-dependent pyridine nucleotide reductase signature 252 270 - -
Ssu6g0389 476 SUPERFAMILY FAD/NAD(P)-binding domain 80 302 IPR036188 -
Ssu6g0389 476 Pfam Pyridine nucleotide-disulphide oxidoreductase 82 384 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0389 Ssu-Chr6 6183256 6191734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0389 391 421 Acyl Lipid Metabolism Gene Families AT3G16950 77.419 4.01e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0389 K00382 - gmx:100782004 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0389 6 6183256 6191734 Ssu6g0389 6 6183256 6191734 ECH
Ssu6g0389 6 6183256 6191734 Ssu1g1252 1 27736728 27742508 PCT