Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1252 ATGCAATCATCCATTTCGCTTTCTTCCTCCTACGCTGCCACCATTTCGGGGCCACGCCACTCTTTTCCCCTCGCCGGTGCCGCTCCCGCGCCTTCTAATCTCCGTTTCTGCGGTCTCCGCCGCCAGGCATTCACTCCCACTTCCCTCAaccgccaccgccaccgccacAGCCGCCGCCTGCCACTCTCCGCCGCAGTATCCGCCTCGCTTTCCGACAACGGCACCGCTCCCAAATCGTTCGACTACGACTTGCTCATCATCGGCGCCGGCGTCGGCGGCCACGGCGCCGCGCTCCACGCCGTCGAAAAGGGTTTGAAAACGGCGATTGTTGAGGGAGATGTGGTTGGAGGGACGTGTGTGAACAGAGGCTGTGTTCCTTCTAAGGCTCTTTTGGCTGTGAGTGGTCGTATGCGGGAGCTGCGGGATGATCATCACTTGAAGTCGCTGGGTTTGCAGGTTTCTGCTGCTGGGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTCGCTTCAAAAATCCGTGGCAACTTGACGAACTCCTTGAAAGCACTTAGAGTGGACATTCTCACTGGTTTTGGAACTATTTTGGGTCCTCAAAAGGTGAAAGTTGGCTCTTCCAGCAATGTGGTAACTGCAAGAGACATCATCATTGCCACTGGTTCAGTGCCTTTTGTTCCTAAGGGCATTGAAGTTGATGGGAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGATTGTTCCAGATTGGATAGCAATTGTAGGAAGTGGGTATATTGGCCTTGAATTCAGTGATGTATATACGGCACTAGGAAGTGAGGTTACTTTTATTGAAGCTTTAGATCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCACGGAATATTGACTATCATACTGGTGTTTTTGCATCCAAGATAACTCCTGCAAGAGATGGAAAACCTGTCACGATTGAGCTCATTGATGCAAAGACCAAGGAACAAAAGGACACTTTAGAGGTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACGCAAGGTCTTGGATTGGAGAATATTGACGTTGTAACACAGCATGGTTTTGTTCCTGTGGATGAGCGCATGCGCGTAATTGATGCAAATGGAAAGCGGGTCCCTCATTTATATTGTATTGGTGATGCAAATGGCAAGATGATGCTGGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTCGAACAAGTCACTGGAAGAGATCATGTGCTCAATCATTTAAGCATACCAGCTGCTTGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACTGAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGTTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCTAACACAAAGGCCTTAGCAGAAAACGAAGCAGAGGGTCTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATACTAGGAGTTCATATTTTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGGATATAAAATTTGCGGTTCATGCCCATCCGACTTTGTCTGAGGTTCTTGATGAGCTATTTAAATCAGCAAAGGTGAgctattcataa 1665 0.4703 MQSSISLSSSYAATISGPRHSFPLAGAAPAPSNLRFCGLRRQAFTPTSLNRHRHRHSRRLPLSAAVSASLSDNGTAPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELRDDHHLKSLGLQVSAAGYDRQAVADHANNLASKIRGNLTNSLKALRVDILTGFGTILGPQKVKVGSSSNVVTARDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEIVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFASKITPARDGKPVTIELIDAKTKEQKDTLEVDAALIATGRAPFTQGLGLENIDVVTQHGFVPVDERMRVIDANGKRVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEAEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVSYS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1252 554 Pfam Pyridine nucleotide-disulphide oxidoreductase 82 414 IPR023753 GO:0016491
Ssu1g1252 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 345 361 - -
Ssu1g1252 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 379 401 - -
Ssu1g1252 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 213 231 - -
Ssu1g1252 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 252 270 - -
Ssu1g1252 554 PRINTS FAD-dependent pyridine nucleotide reductase signature 84 103 - -
Ssu1g1252 554 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 82 549 IPR006258 GO:0004148|GO:0050660
Ssu1g1252 554 Gene3D - 432 553 IPR016156 GO:0016491|GO:0050660
Ssu1g1252 554 Gene3D - 225 352 IPR036188 -
Ssu1g1252 554 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 116 126 IPR012999 GO:0016668
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 429 450 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 520 540 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 115 130 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 252 277 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 346 360 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 394 401 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 83 105 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 216 225 - -
Ssu1g1252 554 PRINTS Pyridine nucleotide disulphide reductase class-I signature 498 513 - -
Ssu1g1252 554 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 13 553 - -
Ssu1g1252 554 PIRSF Hg-II_reductase_MerA 46 546 IPR001100 GO:0016491
Ssu1g1252 554 Gene3D - 82 420 IPR036188 -
Ssu1g1252 554 PANTHER DISULFIDE OXIDOREDUCTASE 13 553 - -
Ssu1g1252 554 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 433 544 IPR004099 GO:0045454
Ssu1g1252 554 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 432 546 IPR016156 GO:0016491|GO:0050660
Ssu1g1252 554 SUPERFAMILY FAD/NAD(P)-binding domain 72 423 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1252 Ssu-Chr1 27736728 27742508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1252 1 551 Acyl Lipid Metabolism Gene Families AT3G16950 82.047 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1252 K00382 - gmx:100803176 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0389 6 6183256 6191734 Ssu1g1252 1 27736728 27742508 PCT