LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g0361	ATGGGAGTCACAACCTTTACACAGGAATACTCCTCCTCTGTTGCCCCATCACGTCTATTTAAGGCCTTGATCATAGACTCCAGAAATTTGCTTCCAAAGCTCTTGCCTCAGTTTGTAAAAGATGTGAATGTAATCCAAGGAGATGGGGAAGCTGGAAGCATTGAACAAGTTAACTTCAATGAAGCTAGCCCCTTCAAATATCTGAAACACAGGATTGATGTGCTTGATAAGGACAACTTGGTTTGCAAATACACTATGATTGAAGGGGATCCATTGGGTGACAAGCTTGAGTCTATAGGTTATGAGGTAAAGTTTGAGGCCACTAGTGATGGAGGTTGCCTCTGCAAAATGACAAGCAATTACAAGACCATTGGGGAGTTTGAGGTTAAAGAGGAAGAGGTAAAGGAAGGAAAGGAAAGCACCATTGCGATTTACAGAGTTGTGGAGTCATACCTGCTGGAGAACCCACAAGTATatgcttaa	483	0.4203	MGVTTFTQEYSSSVAPSRLFKALIIDSRNLLPKLLPQFVKDVNVIQGDGEAGSIEQVNFNEASPFKYLKHRIDVLDKDNLVCKYTMIEGDPLGDKLESIGYEVKFEATSDGGCLCKMTSNYKTIGEFEVKEEEVKEGKESTIAIYRVVESYLLENPQVYA	160

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g0361	160	CDD	Bet_v1-like	5	152	-	-
	Ssu6g0361	160	Pfam	Pathogenesis-related protein Bet v 1 family	1	154	IPR000916	GO:0006952
	Ssu6g0361	160	PANTHER	PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN	1	160	-	-
	Ssu6g0361	160	Gene3D	-	1	160	IPR023393	-
	Ssu6g0361	160	PRINTS	Major pollen allergen Bet V1 signature	144	154	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Ssu6g0361	160	PRINTS	Major pollen allergen Bet V1 signature	3	23	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Ssu6g0361	160	PRINTS	Major pollen allergen Bet V1 signature	85	98	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Ssu6g0361	160	PRINTS	Major pollen allergen Bet V1 signature	50	59	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Ssu6g0361	160	PRINTS	Major pollen allergen Bet V1 signature	66	85	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Ssu6g0361	160	PRINTS	Major pollen allergen Bet V1 signature	110	126	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Ssu6g0361	160	PRINTS	Major pollen allergen Bet V1 signature	26	36	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Ssu6g0361	160	PANTHER	-	1	160	-	-
	Ssu6g0361	160	SUPERFAMILY	Bet v1-like	2	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g0361	Ssu-Chr6	5714699	5715271	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g0361	-		-	gmx:100500506	298.13

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g0361	6	5714699	5715271	Ssu1g1280	1	28241094	28241902	PCT
	Ssu1g1281	1	28245323	28246219	Ssu6g0361	6	5714699	5715271	PCT