Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1280 ATGGAGGTCCTCACTTTCACAGAGGAGTTTACTAGCACTGTTCAGCCAGGAAGGATGTTCAAGGCTTTGATCCTTGATGCTCCTAACCTCATCCCCAAACTGATGCCTGAGGCCATTAAGAATGTTCAACTGGTTGAAGGGAATGGAGGCCCTGGAAGCATTCAGGAGATAACCATTATTGCTGAAGGTGATAACATCAAACAATTGAAGCATAGAATTGATGCAATAGACCAAGAGAATTTGACATACAGCTACGCTGTGATTGAGGGGGATGGTGCTCTGGAAAAAGTGGATTCAATTTCACACGAGATAAAGTTTGAGCCCACTGAAAAGGGAGGTTGCAAGACCATGAATGTCAGCAAGTATCATCCTAAAGCAGGGGTTGATGTCAAAGAGGAGGATTTCAAGGTTGCCAGGGAGGAAGGCTTGGCTCTCCTCAAGGTAGTGGATGCCTATCTTGTGGCAAACCCAGAGGCCTATGCTTGA 486 0.4588 MEVLTFTEEFTSTVQPGRMFKALILDAPNLIPKLMPEAIKNVQLVEGNGGPGSIQEITIIAEGDNIKQLKHRIDAIDQENLTYSYAVIEGDGALEKVDSISHEIKFEPTEKGGCKTMNVSKYHPKAGVDVKEEDFKVAREEGLALLKVVDAYLVANPEAYA 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1280 161 PANTHER - 1 161 - -
Ssu1g1280 161 CDD Bet_v1-like 5 153 - -
Ssu1g1280 161 Gene3D - 2 159 IPR023393 -
Ssu1g1280 161 Pfam Pathogenesis-related protein Bet v 1 family 3 155 IPR000916 GO:0006952
Ssu1g1280 161 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 161 - -
Ssu1g1280 161 SUPERFAMILY Bet v1-like 4 160 - -
Ssu1g1280 161 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1280 161 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1280 161 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1280 161 PRINTS Major pollen allergen Bet V1 signature 86 99 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1280 161 PRINTS Major pollen allergen Bet V1 signature 67 86 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1280 161 PRINTS Major pollen allergen Bet V1 signature 111 127 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Ssu1g1280 161 PRINTS Major pollen allergen Bet V1 signature 145 155 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1280 Ssu-Chr1 28241094 28241902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1280 - - pvu:PHAVU_009G252400g 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1280 1 28241094 28241902 Ssu1g1280 1 28241094 28241902 ECH
Ssu6g0361 6 5714699 5715271 Ssu1g1280 1 28241094 28241902 PCT