Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0357 ATGCTAGTGGCATTGCTCTTGCTGCTGGCGTTGAGCAATGAAGTCAGAGttaatggtgatggtggtggtagacAATGTGACCGCAATCCAGCACTAAAGCCAAGACCACACACTGTCTCCATCTTGGAGTTTGGTGCGGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAACGCCATTTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGCTATATGTGCCACCGGGAACATGGTTGACTCAAAGTTTTAACCTTACTAGCCATCTCACACTCTTCTTGGAAAAGGATCCGTTTCACTGGGACGTTGTTGATCCCTTACCTTCTTATGGTCGAGGAGTTGAAGTTCCTGGGGGAAGATATCAGAGTTTGATAAATGGATACCTGTTACACGATGTGGTGATAACAGGTAATAATGGAACCATTGATGGCATGGGATTGGCTTGGTGGGAATTGTTTAGCTCTCATTCCCTGAACTACAGCCGTCCCCATCTGATTGAATTAGTGGCATCTGATCATGTGGTAGTGTCAAATCTTACATTCTTGAACGCTCCTGCATATAGCATCCACCCAGTTTATTGCAGAATCCCCTTATACCGTTGGTATAGTACCAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCCACTGAGAATGTTCACATTAGAAGGGTGCATCTACAAGCTTCTTCTGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTCATCTTTACAACTCAAATAGTGGCATTGAGTTCAGAACCACGAGGGGCAGAGGTGGTTACATGAAGGAAATCATTATATCAGACATAGAAATGGAGAATATATACACTGCAATACTTGCCACGGGTTATTGTGGATCTCATCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGACCacattattttgcaaaatatgaTTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCCTTCACTAACATATGCCTTTCCAACATAACTTTGTCTATAAGTTCTGTTTCTTCCCTTACTTGGGAATGCTCAAATGTCTCTGGATTTTCAGATTCTGTTCTTCCCAAACCCTGTCCTGATCTTGAGACCCTTTCGGATTGTCTTTCTTTGTTGAGTATCAACGGAAAAACTACAGTCGTGTGA 1215 0.4198 MLVALLLLLALSNEVRVNGDGGGRQCDRNPALKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKDPFHWDVVDPLPSYGRGVEVPGGRYQSLINGYLLHDVVITGNNGTIDGMGLAWWELFSSHSLNYSRPHLIELVASDHVVVSNLTFLNAPAYSIHPVYCRIPLYRWYSTSGWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSNSGIEFRTTRGRGGYMKEIIISDIEMENIYTAILATGYCGSHPDDKFDPNALPLLDHIILQNMIGTNITIAGSFAGLQESPFTNICLSNITLSISSVSSLTWECSNVSGFSDSVLPKPCPDLETLSDCLSLLSINGKTTVV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0357 404 Gene3D - 206 376 IPR012334 -
Ssu6g0357 404 Gene3D - 34 200 IPR012334 -
Ssu6g0357 404 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 208 393 - -
Ssu6g0357 404 Pfam Pectate lyase superfamily protein 39 96 IPR024535 -
Ssu6g0357 404 Pfam Glycosyl hydrolases family 28 224 371 IPR000743 GO:0004650|GO:0005975
Ssu6g0357 404 SUPERFAMILY Pectin lyase-like 32 384 IPR011050 -
Ssu6g0357 404 PANTHER PECTIN LYASE-RELATED 208 393 - -
Ssu6g0357 404 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 199 - -
Ssu6g0357 404 PANTHER PECTIN LYASE-RELATED 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0357 Ssu-Chr6 5695476 5697972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0357 3 391 Glycoside Hydrolase AT3G06770 57.534 6.02e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0357 - - gmx:100802343 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0357 6 5695476 5697972 Ssu6g0357 6 5695476 5697972 ECH
Ssu6g0357 6 5695476 5697972 Ssu1g1284 1 28258318 28260102 PCT