Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1284 ATGCTTGTGGCATTGCTCTTGCTGTTGGCATTGAGCAATGCCGTGAGAGTTAATGGAGATGGTGGGCAATGTGGTTCCATCCCAACACTAGAACCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTCAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAGGGTGGCGCTCAGCTGTATGTACCTCCTGGCAAATGGCTCACTGGAAGCTTCAATCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGAACTCAGGATCCATCTCATTGGGATGTTGTTGAACCTTTGCCTTCTTACGGCCGAGGGCTTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATATTACATGATGTGGTCATCACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCTCATTCCTTGAACCACAGCCGTCCTCATCTGGTTGAAATTGTGGCATCTGATTATGTGGTAGTTTCAAATCTTACATTTTTGAATGCCCCAGCTTATGCCATACACCCAGTTTATTGCAGCAATGtacatattcaaaatatttcaatctCTACTCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGGTTTGCAACAAACATATTATGCACTCTACTTTTGGTTTTCATTGTGA 732 0.4276 MLVALLLLLALSNAVRVNGDGGQCGSIPTLEPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGTQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYILHDVVITGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYAIHPVYCSNVHIQNISISTPPESPYTVGIVPGLQQTYYALYFWFSL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1284 243 Pfam Glycosyl hydrolases family 28 136 228 IPR000743 GO:0004650|GO:0005975
Ssu1g1284 243 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 229 - -
Ssu1g1284 243 SUPERFAMILY Pectin lyase-like 30 228 IPR011050 -
Ssu1g1284 243 Pfam Pectate lyase superfamily protein 37 94 IPR024535 -
Ssu1g1284 243 Gene3D - 32 233 IPR012334 -
Ssu1g1284 243 PANTHER PECTIN LYASE-RELATED 2 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1284 Ssu-Chr1 28258318 28260102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1284 1 228 Glycoside Hydrolase AT3G16850 69.130 6.56e-112 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1284 - - gmx:100806574 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0357 6 5695476 5697972 Ssu1g1284 1 28258318 28260102 PCT