Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0354 ATGCGGAAACAGGGTGATTTGGCAGTTGCGAGTGTGTATGGGGGGAGCGGGTGTGTGGAGTTAAAAGGCCCTGAAGTTGTAGATGAGTTACAAGAGTTGTTGAGGTTGTTGACGTTGTGCATGCTTTTCTCCAAGAAAACATTTCCCGAGTTTTTAGATTCCGCAAGATTCTCCTTGGACCATGTCCTTCTCCACAACCCCAAAGCTGAGCTTCTGATGCCTGCTTTCACAATTATACATGATACGCCATCAAAATGTTTCCTTCTATTGATCCGCGGAACCCATAGCATAAAAGACACGCTGACAGCTGCAACTGGTGCTGTGGTTCCCTTTCATCATTCCATTTTAAATGACGGAGGGATAAGCAACTTGGTTTTAGGATATGCACACTGTGGTATGGTTGCTGCAGCTCGTTGGATTGCAAAACTCTGCACTCCTACACTACTTAAGGCTCTTACTGAATGTCCAGACTCAAAAATCAAGGTCGCTGCATCATCTTGGTTGAATGATTTATGGGATCAGGTCGAACATACAAAGGTTCTGAAAGTCGTCTACCGCTCAGCAACTGCACTTAGATCTCACTTACAATCTATATCTAGTGCAAAAGACAAGGTAGCTGGTGCAGGTGCTATTCTTTGGCCAGTAACCAGTGGCACCCAGGTTGTGATGAAGCGTGCACAAAGTGTTGCCAAAGCTGTTGTCAAAACTATGGATGCACAACATCGGAATATTGTCCCATTGCCAAAATCTAAATTAGATAACTTGGCCGAAGCTTCTCTAGTACCTGAAAGTTTAAGTGTTGACACAACCCGCCTTCTCTATGCGATCATTGACGAGTCGCCTTTCACCCCTTGA 855 0.4491 MRKQGDLAVASVYGGSGCVELKGPEVVDELQELLRLLTLCMLFSKKTFPEFLDSARFSLDHVLLHNPKAELLMPAFTIIHDTPSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSILNDGGISNLVLGYAHCGMVAAARWIAKLCTPTLLKALTECPDSKIKVAASSWLNDLWDQVEHTKVLKVVYRSATALRSHLQSISSAKDKVAGAGAILWPVTSGTQVVMKRAQSVAKAVVKTMDAQHRNIVPLPKSKLDNLAEASLVPESLSVDTTRLLYAIIDESPFTP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0354 284 SUPERFAMILY alpha/beta-Hydrolases 66 162 IPR029058 -
Ssu6g0354 284 PANTHER LIPASE CLASS 3 FAMILY PROTEIN 162 263 - -
Ssu6g0354 284 Gene3D alpha/beta hydrolase 43 166 IPR029058 -
Ssu6g0354 284 PANTHER LIPASE CLASS 3 FAMILY PROTEIN 1 162 - -
Ssu6g0354 284 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 162 263 - -
Ssu6g0354 284 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Ssu6g0354 284 PANTHER LIPASE CLASS 3 PROTEIN-LIKE 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0354 Ssu-Chr6 5642976 5649567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0354 161 261 Acyl Lipid Metabolism Gene Families AT4G16070 57.273 2.09e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0354 - - gmx:100801263 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0354 6 5642976 5649567 Ssu6g0354 6 5642976 5649567 ECH
Ssu6g0354 6 5642976 5649567 Ssu1g1286 1 28328413 28333215 PCT