Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0346 ATGGCCATTGCAAAGAGTGCTGCCATTCTTATTTTGTGCTTTGCATTGGCCTGCAATGCGAATCATGCTCCAAAACGAACCCCAGTTGCTGGTCCTGATATATTCGGCAAGAAAAATGTGGCTCAGGATGTGCTCCTTCCTGGGGAGAAAATAGTTAGCATCGTGGATTTTGGAGCCGTAGGTGATGGCGAGTCCGACTGCACCCAGGCTTTCATGGATGCATGGAAAAAGGTCTGCCATGAATCCTTTGGGCCAACCAGGCTTTTGGTTCCACCTGGCAAATACTTGCTTTCACCAATGTTTTTTACTGGGCCATGCAATGCTTCAAGTCCAATAACATTTCAAGTACAAGGGACTGTTTTGGCTAGCACGGATCTTTCGGAGTATGTAAACGAAGATTGGTTAAGATTCGAGAAAAACAATGGCTTGAAAATTATTGGTGGGGGCATTTTCGATGGCCAGGGTCAAGAATCATGGAAACACGCGGAGAATTGCGAATCAGGCGCTGATGAGTCATGCAGGAGGAATCCAAGCAACCTTTATTTCGAAGACAACAACAACGTGATTATACAGAATATCAGATCAGTGAATCCCAAAGGCTTCCACATGTTCGTTACCAAATCCACCAACGTCAGATTAAGAAAACTTAAGCTGGTTGCACCGGAAACAAGCCCCAATACGGATGGCATTCATGTCAGCCGCTCTGAAAAAGTGATAATATCCAGAACTACCATTGCAACTGGGGATGACTGTATCTCTATCATAAATGGAGTCAAAAATATGTTCATCAACAAACTCAAGTGTGGCCCTGGACACGGTATTAGtatCGGTAGCCTTGGGAAGTATCCGAATGAGGAGGAGGTGAAAGGCGTTCGTATCAAGAACTGCTCATTGATTGGCACAACCAATGGCCTTAGAATCAAAGCATGGCCTGATAAGTATCCAGGTGCAGCGTCAGATATAAGCTTCAGTAACATTGTCATGCAAGATGTCAAAAATCCCATCATCATTGACCAAGAGTACCAATGTTATCCAGACTGCAAAAAGAAGCCCTCACTTGTAAAGATCCAAAACGTTCATTTTTCAAATGTAAGGGGAACTACAACTTCACCACTTGCAGTGGACTTAAGGTGCAGCGAGCTGTTCCCATGCCAAGGTGTTACAGTTCGAGACATCGACCTGAAGCTACGACTCGACCCAACCACCTCAAGATGTGTCAATACTAAACCTCTCTTTGGCGGCTTGCTAATGCCCCCAGCTTGCCCATAG 1269 0.4507 MAIAKSAAILILCFALACNANHAPKRTPVAGPDIFGKKNVAQDVLLPGEKIVSIVDFGAVGDGESDCTQAFMDAWKKVCHESFGPTRLLVPPGKYLLSPMFFTGPCNASSPITFQVQGTVLASTDLSEYVNEDWLRFEKNNGLKIIGGGIFDGQGQESWKHAENCESGADESCRRNPSNLYFEDNNNVIIQNIRSVNPKGFHMFVTKSTNVRLRKLKLVAPETSPNTDGIHVSRSEKVIISRTTIATGDDCISIINGVKNMFINKLKCGPGHGISIGSLGKYPNEEEVKGVRIKNCSLIGTTNGLRIKAWPDKYPGAASDISFSNIVMQDVKNPIIIDQEYQCYPDCKKKPSLVKIQNVHFSNVRGTTTSPLAVDLRCSELFPCQGVTVRDIDLKLRLDPTTSRCVNTKPLFGGLLMPPACP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0346 422 PANTHER POLYGALACTURONASE 2 421 - -
Ssu6g0346 422 Pfam Glycosyl hydrolases family 28 84 409 IPR000743 GO:0004650|GO:0005975
Ssu6g0346 422 ProSitePatterns Polygalacturonase active site. 265 278 IPR000743 GO:0004650|GO:0005975
Ssu6g0346 422 PANTHER - 2 421 - -
Ssu6g0346 422 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Ssu6g0346 422 SMART pbh1 185 234 IPR006626 -
Ssu6g0346 422 SMART pbh1 235 256 IPR006626 -
Ssu6g0346 422 SMART pbh1 318 339 IPR006626 -
Ssu6g0346 422 SMART pbh1 351 391 IPR006626 -
Ssu6g0346 422 SMART pbh1 288 309 IPR006626 -
Ssu6g0346 422 Gene3D - 46 411 IPR012334 -
Ssu6g0346 422 SUPERFAMILY Pectin lyase-like 47 421 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0346 Ssu-Chr6 5516320 5518267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0346 31 422 Glycoside Hydrolase AT1G02790 43.921 1.50e-107 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0346 K01213 - gmx:100800324 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0346 6 5516320 5518267 Ssu6g0346 6 5516320 5518267 ECH
Ssu6g0346 6 5516320 5518267 Ssu1g1293 1 28493571 28498018 PCT