Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1293 ATGGCCACTACGAAGAGAGTTGGTGTTCTAATTATGTGCTTTGCACTGGCATATTATGTGGATGCTAAACCAAGAACAATGCCAATTGCTGGTCCTGATATCTACGAAGGTCAAAATGTAGCTAAGGATACCCTTGCTTCTGGCGAGAAGATAGTTAACGTCATGAGCTTTGGAGCCAAACCTAATGGCAAGTTTGATTGCACTCAGGCTTTCATGGATGCATGGAGAGCAACTTGCAAATCTAAAGTGCAAGCCAGGCTTCTGATCCCTCAAGGAAGATTCGTGGTTTCTACAATGTTTTTCGCAGGGCCATGTTTGACTCCAGGGCCCGTAACAATCCAAGTTGTAGGCACTGTTGTGGCTACAACAGATATCAGTGAGTATGTGAATGGGGAATGGCTCATGTTTGAGGACCTGGATGGTGTAAAACTTATTGGTGGTGGTACTTTTGATGGGATGGGTAAGGAATCATGGGCACAAACCGAGAACTGTGAAACAGACCCCTCCAACACTTGCGTCAGAAACCCTAGTAGTATTTATTTCAACAAAGTTCGGAATGGAATTATACAGAACATCAAATCCGTAGACCCCAAAGGCTTTCACATGTTTGTCACCAACTCTGCTAACATCAGACTTCGATTACTTAAGCTCACCGCACCAGCTACCAGCCCCAACACCGATGGAATTCATATTAGCCACTCCGTCAATGTAATattatccaaaaataatgttgaaACTGGGGATGATTGTGTTTCCATGATACAAGGAGTCAACGATGTTTCCATCAACAAACTGGAATGTGGTCCTGGTCACGGTATTAGTATTGGAAGTCTTGGAAAGTATGCTGATGAGCAAGAAGTGAAAGACATTCGTGTCAACAACTGCACGATGGTTGGCACAACCAATGGCCTCAGAATCAAGGCTTGGCCAGATAAGTATCCAGGGGCAGCATCAGATATCAGCTTCAGTGACATTACCatggaaaatgttaaaaatccaATCATCATTGACCAAGAGTATCAATGCTTTCCAAACTGCAAAAAGAagCCTTCacttgtaaagataaaaaatgttcGTTTTTCAAATATAAGGGGAACATCAACTTCACCAATTGCAGTGGATTTAAGCTCTGGCAATAAAGAGGAGGGAAGGGAAAGTAGTGTTTTGGACAAAAATCAGAACAAATGGGGAAAACTTACTGGAGAGGGTGAAAAGGTTTTCAAGGATGGTTTTGAATCCCAATTAACTAGCTGA 1254 0.4107 MATTKRVGVLIMCFALAYYVDAKPRTMPIAGPDIYEGQNVAKDTLASGEKIVNVMSFGAKPNGKFDCTQAFMDAWRATCKSKVQARLLIPQGRFVVSTMFFAGPCLTPGPVTIQVVGTVVATTDISEYVNGEWLMFEDLDGVKLIGGGTFDGMGKESWAQTENCETDPSNTCVRNPSSIYFNKVRNGIIQNIKSVDPKGFHMFVTNSANIRLRLLKLTAPATSPNTDGIHISHSVNVILSKNNVETGDDCVSMIQGVNDVSINKLECGPGHGISIGSLGKYADEQEVKDIRVNNCTMVGTTNGLRIKAWPDKYPGAASDISFSDITMENVKNPIIIDQEYQCFPNCKKKPSLVKIKNVRFSNIRGTSTSPIAVDLSSGNKEEGRESSVLDKNQNKWGKLTGEGEKVFKDGFESQLTS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1293 417 Gene3D - 38 401 IPR012334 -
Ssu1g1293 417 SMART pbh1 317 338 IPR006626 -
Ssu1g1293 417 SMART pbh1 287 308 IPR006626 -
Ssu1g1293 417 SMART pbh1 350 377 IPR006626 -
Ssu1g1293 417 SMART pbh1 184 233 IPR006626 -
Ssu1g1293 417 SMART pbh1 234 277 IPR006626 -
Ssu1g1293 417 SUPERFAMILY Pectin lyase-like 49 377 IPR011050 -
Ssu1g1293 417 MobiDBLite consensus disorder prediction 374 395 - -
Ssu1g1293 417 PANTHER POLYGALACTURONASE 2 379 - -
Ssu1g1293 417 Pfam Glycosyl hydrolases family 28 79 384 IPR000743 GO:0004650|GO:0005975
Ssu1g1293 417 PANTHER - 2 379 - -
Ssu1g1293 417 MobiDBLite consensus disorder prediction 378 395 - -
Ssu1g1293 417 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1293 Ssu-Chr1 28493571 28498018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1293 51 402 Glycoside Hydrolase AT1G02790 42.898 6.31e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1293 K01213 - gmx:106796220 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1293 1 28493571 28498018 Ssu1g1293 1 28493571 28498018 ECH
Ssu6g0346 6 5516320 5518267 Ssu1g1293 1 28493571 28498018 PCT