Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0328 ATGGCCGTCGTAACTAGCAACGGCAAGCGCCGCCAACAGTGGCTCGCCGTGAATTACCACCATCCATCTCCCAATTCGAAAAGACCTAGAGTGTCAACAAGGTCCCAAAACCACACGCAATCCGTGTTATCCTCGAGTAGCGTGGTTTCGAGAATTTCTCTCTACCCCGAAGCCAAGCCATCTTTGCGTAGGGAGGTTCACGCCCCGTGTAGACCACGTAAGTTTGATTTTCGGACCTTTTCTAGAACGGAATTCAGCTTGAATGCTAGTGTTTATTCTCACAAGGAAGATATTAGTAACGATATGGGCAACATGTTAAGTAAAAATTACCAAAGGGCGAAGAATTCTGCGTTACCTACCATTAGATTTGGGGAAAAGGGCAAGGAGGTTGTAGAAGTGGATGATGATAGTCCCAAGGGTATGGTTTCAGAGGATTCAAGTGTGGAGGAGGTTCATTTTGTGGAAGAAGATGGACGAGAAGGGCGCTCTGTGGTGACGGAGCACAAGTGGCAAGAGGGTGATTTGGTTGTGACTGAGATAAAGGATTTGGATGCTAAGCATATGCGTGGTGGCCCTCAGCAGCAGTCAACTTCATCTGTGGTTTCGGGGTTGACTAATGGCAATTTGAATGTGGCTAATGCTGCGAAGATGTTGGACACTTTGTCTTTAAGTCCGGAGCATGATCTTTTGAGTGTTCATGCCTATAAGAAGTTGCTCGAGGCTGTTGGCAAGCGAAATGATATGATTAACAGGCTCGAGGTTGAAATTCAACTTAACGAGAAGCGTCGGGCCACGTTTGAATTGTTGCGTCCGAAGAAGGAAATAGTAGAGGAAGTGCCATTGGAACCTTTTATTCCTCTTACTAAGGAGGAAGAAGTTGAGGTTGCACGTGCCTTTTCTGCCAACAGGAGGAAGATCTTGGTTACCCATGAGAAATCTTGCATTGAGATCTCAGGAGAAAAGTTTCAGTGCCTTAGGCTGGGTGCATGGTTAAACGATGAGGTGATAAATTTGTACCTTGAGTTGTtgaaagagagggagagaagagagcCGCAGAAGTTTCTGAACTGTCATTTTTGCAATACCTTTTTCTACAAGAGGTTAATAAGTGGCAAGAATGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCTTACATGAATGTGATAAAATATTTGTACCTATCCATAAAGATATCCATTGGTGCTTGGCTGTTAtcaataagaaagaaaagaaatttcagTATCTGGACTCACTGAGAGGAACGGATACCCAAGTGATGAAAGTGCTGGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGAAAAAGGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGGTATGATTGTGGCGTGTTTATGATCAAATACGCTGACTTCTATAGCAGAAACTTGGGGCTGTGTTTTAACCAGGATCACATGTCTTACTTTCGGCGCAGAACAGCTAAGGAAATCTTGAGATTAAAAGCTGACTAA 1554 0.4234 MAVVTSNGKRRQQWLAVNYHHPSPNSKRPRVSTRSQNHTQSVLSSSSVVSRISLYPEAKPSLRREVHAPCRPRKFDFRTFSRTEFSLNASVYSHKEDISNDMGNMLSKNYQRAKNSALPTIRFGEKGKEVVEVDDDSPKGMVSEDSSVEEVHFVEEDGREGRSVVTEHKWQEGDLVVTEIKDLDAKHMRGGPQQQSTSSVVSGLTNGNLNVANAAKMLDTLSLSPEHDLLSVHAYKKLLEAVGKRNDMINRLEVEIQLNEKRRATFELLRPKKEIVEEVPLEPFIPLTKEEEVEVARAFSANRRKILVTHEKSCIEISGEKFQCLRLGAWLNDEVINLYLELLKERERREPQKFLNCHFCNTFFYKRLISGKNGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKDIHWCLAVINKKEKKFQYLDSLRGTDTQVMKVLASYIVDEVKDKTGKDIDVSSWKKEFVEDLPEQQNGYDCGVFMIKYADFYSRNLGLCFNQDHMSYFRRRTAKEILRLKAD 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0328 517 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 516 - -
Ssu6g0328 517 Gene3D Adenoviral Proteinase; Chain A 284 515 - -
Ssu6g0328 517 ProSiteProfiles Ubiquitin-like protease family profile. 315 487 IPR003653 GO:0006508|GO:0008234
Ssu6g0328 517 SUPERFAMILY Cysteine proteinases 283 515 IPR038765 -
Ssu6g0328 517 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 516 - -
Ssu6g0328 517 MobiDBLite consensus disorder prediction 25 44 - -
Ssu6g0328 517 Pfam Ulp1 protease family, C-terminal catalytic domain 330 511 IPR003653 GO:0006508|GO:0008234
Ssu6g0328 517 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0328 Ssu-Chr6 5201304 5208018 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0328 K08592 - gmx:100805645 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0328 6 5201304 5208018 Ssu6g0328 6 5201304 5208018 ECH
Ssu6g0328 6 5201304 5208018 Ssu1g1329 1 29262619 29270667 PCT