Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1329 ATGGGTGTGATGACCATCAACCGCAAGCGCCCCGAAGAATGCATGAACGTAAACCACACCAATTCAGATTCCCCCCGAAAACGCCCCAAATTCTTGGCCAAGCCCGTTCCGTCCGCCGCCAGCGCCGTCGCGAGACTCTCCCGGTACCCGGAGGCGAAGCAGCCGTTGGCGAGGGAGGTTCACGCGCCGTGCAGGTCGCGAAAATTCGAACTCGCGAGGTCCTCCGCTAGGGTTAGCGCCAACGGCGCCATGGGGAACTTTCTGGTGGCGAATTACGAGAAGGCGAAGCGTTCCGCGTTGGCGAAGTGCAGGTTCGTGTTGGAGAAGGGGAAGGAGGTGATTGACGTGGACGCGGCGGAGAGTGAAGAGCCTCGGTTCGGGAGCTGCGAGGATTCGAGTGTGGAAGAGGCGCGTGGTGATGGTGACAAGGTTGTGGTTCGGCGGCGTCAGCAGCAGTCCACGTCTGCGTTTGATTCGGAGTTGACGAATGGGGAGTTGAAGGTGGTGAGTGGAGGGAGGGTTTTGGGTTCTGAGACGCGTGATTTGTCGAGTGTTCATGTGTATAGGAAGTTGCTTGAGGGTGTTGGGAGGAGAAATGACGCGATTCAGAGGCTGAATTTTGAGATTGAGCTGAATGAGAAGCGCTTGGACACTTATAATTTGATGCGGCCGAAGAAGGAGTTGGTTGAGGAACAGGAAGTGCCGCAAGAGCCTTTTGTTGATCTTACGAGTGAGGAGGAAGATGAGGTTGAACGCGCCTTTTCTGCCAACCGGTGGTCGATCTTGGTTACCCATGAGAATTCTAACATTGAGATCACGGGAGAAAAGTTTCAGTGTCTTAGGCTGACTGGATGGCTAAATGATGAGGTGATAAATTTGTACCTCGCATTGCTGAAAGAGAGGGAGCAAAGAGAACCACAGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAGAAGTTAATAAGTGGTGCGAATGGTTATGATTTCAAATCTGTCAGACGATGGACAAGCCAACGGAAATTGGGATACAGTCTACTTGAATGTGATAAAATATTTGTACCTATCCATCAAGAGATACATTGGTGCTTGGCAGTTATCAATAAGAAAGATAAGAAATTCCAGTATCTTGACTCAATGAAAGGAGAGGATAAATCTGTGCTAGATAAGCTGGCTCAATATTTTGCGGATGAAGTAAATGATAAAACTGGAAAAGATATTGATGTAAATTCCTGgaaaaaagaatttgtgaaAGACCTTCCTGTGCAGGAAAATGGGTATGATTGTGGGGTGTTTATGATCAAATATGCTGACTTTTATAGCAGGGGCCTGGAGCTGTGTTTTAACCAGAAAAACATGTCTTACTTCCGGCGTAGGACTGCTAGGGAGATCTTGAGATTGAAAGCTGAATGA 1419 0.4785 MGVMTINRKRPEECMNVNHTNSDSPRKRPKFLAKPVPSAASAVARLSRYPEAKQPLAREVHAPCRSRKFELARSSARVSANGAMGNFLVANYEKAKRSALAKCRFVLEKGKEVIDVDAAESEEPRFGSCEDSSVEEARGDGDKVVVRRRQQQSTSAFDSELTNGELKVVSGGRVLGSETRDLSSVHVYRKLLEGVGRRNDAIQRLNFEIELNEKRLDTYNLMRPKKELVEEQEVPQEPFVDLTSEEEDEVERAFSANRWSILVTHENSNIEITGEKFQCLRLTGWLNDEVINLYLALLKEREQREPQKFLKCHFFNTFFYKKLISGANGYDFKSVRRWTSQRKLGYSLLECDKIFVPIHQEIHWCLAVINKKDKKFQYLDSMKGEDKSVLDKLAQYFADEVNDKTGKDIDVNSWKKEFVKDLPVQENGYDCGVFMIKYADFYSRGLELCFNQKNMSYFRRRTAREILRLKAE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1329 472 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 159 471 - -
Ssu1g1329 472 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 138 - -
Ssu1g1329 472 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 159 471 - -
Ssu1g1329 472 Pfam Ulp1 protease family, C-terminal catalytic domain 285 466 IPR003653 GO:0006508|GO:0008234
Ssu1g1329 472 SUPERFAMILY Cysteine proteinases 238 470 IPR038765 -
Ssu1g1329 472 Gene3D Adenoviral Proteinase; Chain A 228 470 - -
Ssu1g1329 472 ProSiteProfiles Ubiquitin-like protease family profile. 270 442 IPR003653 GO:0006508|GO:0008234
Ssu1g1329 472 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1329 Ssu-Chr1 29262619 29270667 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1329 K08592 - gmx:100780703 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0328 6 5201304 5208018 Ssu1g1329 1 29262619 29270667 PCT