Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0316 ATGGATGCAAAGTCTCCTGAAGTTGTTGCTCCCTCAGAACCATTGAAGTATCAGACATGGTTCTTGAAAGTTTCCATCCACTGTGAAGGTTGCAGGAGGAAAGTTAAGAAGGTTCTACAGAGCATTGATGGTGTTTTTACCACAACGGTTGACCCGCAACAGCAGAAAGTAACGGTCACTGGAAGCGTCGGCGTCGAGACGCTGATCAGGAAACTGGTGAAGGCCGGAAAACACGCCGAGATTTGGCCGGAGAATCTCGCCGCCGGGAAGGGAAAGAACTCCGGCAAAGAGAAGAAGCAGAAGAAGAACGAACAAGGAGAACCAGAAAGCGCCGAAGACCATTCTGCTCCAAATGCAGAACCCAACACCAACTCCAGCCAAAAAAAGAGAATTGAAAAAGGTGCTGAAAAGCGCAACGGCGTAACCAAGAGCTCCGGCGCCGGCGAAAGTGAGGCACCGGAGCCGGAGAACAAGGGTGGTCAAGGTGAAGGAGGTTctgggaagaagaagaaaaagaaaggtcaGAGTGGTGGTTGCGGTGAGAGTGCAGCGTCTAGCGGTGCAGGTGCACGCAGTGGATCAGATTTCCAGTGTTCTGGGCAGGTTGTGGGCCAGATGTATCTCAGCCCTACACGTCAGCAATCATACCCGTATCCAGCAACTTACTGTTATCCCCCACTGGTGTATCTCCCAACTCACAACAGGTTATGTCCCATGGGAACAATGGGTGGTCCTTCTTACTATGTTTCACCATTGCCCTACACGTGCGCAGGCCTCGACCATGACCCTTATCATCGCCTTCAATCTACGCCGTTCGTTCCCTTCGAGATCTTCAGTGATGAGAATGCCAACGGGTGTTCTATTATGTGA 870 0.4989 MDAKSPEVVAPSEPLKYQTWFLKVSIHCEGCRRKVKKVLQSIDGVFTTTVDPQQQKVTVTGSVGVETLIRKLVKAGKHAEIWPENLAAGKGKNSGKEKKQKKNEQGEPESAEDHSAPNAEPNTNSSQKKRIEKGAEKRNGVTKSSGAGESEAPEPENKGGQGEGGSGKKKKKKGQSGGCGESAASSGAGARSGSDFQCSGQVVGQMYLSPTRQQSYPYPATYCYPPLVYLPTHNRLCPMGTMGGPSYYVSPLPYTCAGLDHDPYHRLQSTPFVPFEIFSDENANGCSIM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0316 289 ProSiteProfiles Heavy-metal-associated domain profile. 25 81 IPR006121 GO:0046872
Ssu6g0316 289 CDD HMA 22 80 IPR006121 GO:0046872
Ssu6g0316 289 MobiDBLite consensus disorder prediction 84 195 - -
Ssu6g0316 289 Gene3D - 16 81 - -
Ssu6g0316 289 SUPERFAMILY HMA, heavy metal-associated domain 16 83 IPR036163 GO:0046872
Ssu6g0316 289 MobiDBLite consensus disorder prediction 91 114 - -
Ssu6g0316 289 Pfam Heavy-metal-associated domain 24 78 IPR006121 GO:0046872
Ssu6g0316 289 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 1 289 - -
Ssu6g0316 289 MobiDBLite consensus disorder prediction 179 195 - -
Ssu6g0316 289 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0316 Ssu-Chr6 5063655 5064905 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0316 - - gmx:100808829 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0316 6 5063655 5064905 Ssu6g0316 6 5063655 5064905 ECH
Ssu6g0316 6 5063655 5064905 Ssu1g1340 1 29424758 29426129 PCT