Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1340 ATGGATGCAAAACCTGCTTCAGAACTTTTGAAGTATCAGACATGGTTCTTGAAAGTTCCCATCCACTGTGAAGGTTGCAGGAGGAAAGTAAAGAAAGTTCTGAAGAGCATTGACGGCGTTTTCACTGCAACAATAGACCCACAGCAGCAGAAAGTAACAGTCACCGGAAGTGTTGGTGTCGAGATCCTTCTCAGGAAGCTAGCCAGAGCCGGAAAACACGCCGAGATTTGGCCGGAGAGCCTCGACGGCGACGGAAAAATCTCCGGCAAAggggagaagaaaaagaataagaagaacGAAGCAAGAGAACCACAGAGCTTGGAAAGCAAGGGAACTGAAAATGCCACTGCTAAGCGTAATAGCACTGAGAACAAGAGCAGCAACTCAAACCCCGGCGACAACTCGCCGGAAAAGTCCCCTTCCGGTGACCAGGTTCCGCCGGAGGGTGGTCGGAGCGAAGGTTCTggtaagaagaagaaaaagaaagctcAGAGTGGTGGCAATGGGAACAGTTGTTTGAGTTCTGAATCTTCTCGTGCGCCTGCACACACTGGATTGCAGTTTCAGGATCTTGTGGGCCAGGAAATGGGCCGAGTGAATGTGAGCCCTACACGTCAGCAATCGTTGTCGTACCCAGAAAGTGGTTATCCTCCTATGGTTTATGTTGCAACTTACAACAGACTATACCCCATGGCGAGAGTTGGGGGTCCTTCTTACCATGTTCCATGTTCGCCCTATATGTGTGCAGGTCTAGGCCAAGACGGTTATCACTTTCAATCAGCACCGTTGGTTGCCTTTGAGATCTTCAGTGATGAAAATGCTAATGGGTGTTGCGTTATGTGA 843 0.4686 MDAKPASELLKYQTWFLKVPIHCEGCRRKVKKVLKSIDGVFTATIDPQQQKVTVTGSVGVEILLRKLARAGKHAEIWPESLDGDGKISGKGEKKKNKKNEAREPQSLESKGTENATAKRNSTENKSSNSNPGDNSPEKSPSGDQVPPEGGRSEGSGKKKKKKAQSGGNGNSCLSSESSRAPAHTGLQFQDLVGQEMGRVNVSPTRQQSLSYPESGYPPMVYVATYNRLYPMARVGGPSYHVPCSPYMCAGLGQDGYHFQSAPLVAFEIFSDENANGCCVM 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1340 280 Pfam Heavy-metal-associated domain 18 70 IPR006121 GO:0046872
Ssu1g1340 280 Gene3D - 11 76 - -
Ssu1g1340 280 ProSiteProfiles Heavy-metal-associated domain profile. 21 76 IPR006121 GO:0046872
Ssu1g1340 280 MobiDBLite consensus disorder prediction 108 141 - -
Ssu1g1340 280 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 3 280 - -
Ssu1g1340 280 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 3 280 - -
Ssu1g1340 280 CDD HMA 17 75 IPR006121 GO:0046872
Ssu1g1340 280 MobiDBLite consensus disorder prediction 79 107 - -
Ssu1g1340 280 MobiDBLite consensus disorder prediction 165 181 - -
Ssu1g1340 280 SUPERFAMILY HMA, heavy metal-associated domain 12 78 IPR036163 GO:0046872
Ssu1g1340 280 MobiDBLite consensus disorder prediction 79 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1340 Ssu-Chr1 29424758 29426129 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1340 - - ccaj:109804519 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1340 1 29424758 29426129 Ssu1g1340 1 29424758 29426129 ECH
Ssu6g0316 6 5063655 5064905 Ssu1g1340 1 29424758 29426129 PCT