Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0311 ATGGAACACAGAACGCTAGAACTCAACCTCGCATCGGCAAAGGACCTCAAAGACGTGAATCTCTTCTCCAAGATGGACGTGTACGCCGTCGTTTCACTCTCCGGCAATCAAAAGATCAAGACTCCCGTTGACCGAAACGGCGGCACCAACCCGACCTGGAATTTTCCGATGAAGTTCGCCATCGACGAATTGCTCGCGCGCCAGAATCGATTGACTCTCGAAATCAAGCTCCGCTGCGAGCGCAGCCTCGCCGCCGACAAGGACGTCGGCCAGGTCCACGTCCCCCTCCGGGAGCTCCTCGACCAAACCGGCGACGGAAAGTCCTTCCAACACGTCAGTTACCAGGTCAGAAAACCCTCCGGCAAGCCCAAGGGAGCCTTGAACTTCTCCTACAAGTTTGAGGAAAAACTCGCGGCTCCGCCGACAGCGCCGACAGCCCCGGCGGTTCCTAAGGCAGAGCCAGTCACGGCTTATCCTGCTCCAACGGCGGGGTCCACTTCTTCCCTATATCCCAGCGTTTACTCTCCGCCGCCACCGAAATATGCAGCCGGATATGGGAAtcctccgccgccgccgccgcctcAAACAGGTTACGGATATCCGCCTCAAGCAGGTTACGCATATGCGCCACAAGCTAGTTACGGATACGCGCCACAAGCGGGTTATGGTTACCCGCCACAAGCGGGTTATGGATACCCTCCTCCTCAGGTTCAGAGACCGGCGAAGAATAATTTTGGAATGGGATTGGGAGCGGGCTTGCTTGGAGGAGCCTTGGGTGGGCTTCTGATTGGGGACATGATATCTGATGGTTTTGGAGATGCCGTTTCTTGCTTGTTTGTGGCACTGGTACGTGTACAGGTTCCATCTAGTTTTGCTGCTgaaaaaattgggaaaaaacTGTGCTCAAGGAACAACAGTGTTCCCTTCCTACACTGGGGGGTGAAGGACACTCATAGGGGAAACCCAGTGGTGGTGAATATGGAGAACCTGAATTGGTCTAAGGTGGAATTTAAGGGTCTTGAAGAAGAAGACTTAATGATACCATATTCTTCTTTGGGCATTTcgagaaataaaggaaaagggAGGGGCAAAAACGTGAAACAACTCCCTTGGGCCATGAGTTGCCTGACCTCCCTCGCATCGGCATTGTGGGGCCTGTTCTCTGCAATGAAGTACTATGTCGTCACCGGAAAGACTGACACCGACATCGGTGACCTCGTGAACAATAATGAAAACCCCACCATGAAGACGCGTTTCTATTCCTACATCAAGCTCTTTCTTTGGTTATCCATTTCGTTCTTGTGCTTCTAG 1311 0.5042 MEHRTLELNLASAKDLKDVNLFSKMDVYAVVSLSGNQKIKTPVDRNGGTNPTWNFPMKFAIDELLARQNRLTLEIKLRCERSLAADKDVGQVHVPLRELLDQTGDGKSFQHVSYQVRKPSGKPKGALNFSYKFEEKLAAPPTAPTAPAVPKAEPVTAYPAPTAGSTSSLYPSVYSPPPPKYAAGYGNPPPPPPPQTGYGYPPQAGYAYAPQASYGYAPQAGYGYPPQAGYGYPPPQVQRPAKNNFGMGLGAGLLGGALGGLLIGDMISDGFGDAVSCLFVALVRVQVPSSFAAEKIGKKLCSRNNSVPFLHWGVKDTHRGNPVVVNMENLNWSKVEFKGLEEEDLMIPYSSLGISRNKGKGRGKNVKQLPWAMSCLTSLASALWGLFSAMKYYVVTGKTDTDIGDLVNNNENPTMKTRFYSYIKLFLWLSISFLCF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0311 436 Gene3D C2 domain 3 135 IPR035892 -
Ssu6g0311 436 PANTHER OS01G0934100 PROTEIN 1 270 - -
Ssu6g0311 436 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 136 IPR035892 -
Ssu6g0311 436 SMART C2_3c 5 108 IPR000008 -
Ssu6g0311 436 Pfam C2 domain 5 108 IPR000008 -
Ssu6g0311 436 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Ssu6g0311 436 PANTHER INGRESSION PROTEIN FIC1 1 270 - -
Ssu6g0311 436 CDD C2_SRC2_like 5 129 IPR044750 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0311 Ssu-Chr6 4975919 4979975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0311 308 436 Miscellaneous Gene Families AT4G07960 37.838 3.11e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0311 - - aprc:113847350 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0311 6 4975919 4979975 Ssu6g0311 6 4975919 4979975 ECH
Ssu6g0311 6 4975919 4979975 Ssu1g1347 1 29555170 29556009 PCT