Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1347 ATGGAGTACAGGACCTTAGAACTCAACATCATATCCGCAAAGGACCTCAAAGATGTCAATCTCTTCTCCAAGATGGACGTGTACGCCGTCGTTTCGCTCTCCGGCGACCCCCTTCACCCGCAGGGTGCCACAACCCACGTCCACAAAGACGGCGGCACCAACCCCACGTGGAACTACCCGGTGAAATTCTCCGTCAACGAATCGCTGGCGAAGGAGAACCGTTTGTCCCTCGAGATCAAGCTCATCTCCGACCGCACCCTCGCCGGCGACACCGTCATCGGCACCGTCCACGTCCCCCTCGGGGAACTCCTCGACAAACCCGGCAGCGGCAGCTCCTTCCGCCAAGTCAGTTACCAGGTGAGGAAGCCCTCGGGAAAATCCAAGGGCTCCTTCAACTTCTCCTATAAATTCGGCGAACATGTCGCCGAACCGGCGACCAAGGCTGCCTCTAAGGGGTTGCAGGAGCCGGTGATGGCTTATCCTGCACCTACTGCGGCGGGATCTAGTTCGGTGTCTCACGGGACACCGTACCCTCCCCTGCCGCAGCAATATGCGGCAGGATATGGGTATCCACCGCAGCCGATGTACGGTGGATACCCACCGGCTCAATCAGGTTATGGGTACCCACCCCAAGCGGGCTATGGGTACCCACAACAACCGGGCTATGGGTATCCACCGGCCCAGAAACCAAAGAAGAATAAGTTTGGATTGGGGTTGGGAGCTGGGTTGCTTGGCGGTGCCTTGGGTGGCATGTTGATCGGGGATATGGTATCGGATGCTGCTGATTATGATGCGGGATATGATGCTGGCTTTGATGATGCTGGtggatttgatttttaa 840 0.5679 MEYRTLELNIISAKDLKDVNLFSKMDVYAVVSLSGDPLHPQGATTHVHKDGGTNPTWNYPVKFSVNESLAKENRLSLEIKLISDRTLAGDTVIGTVHVPLGELLDKPGSGSSFRQVSYQVRKPSGKSKGSFNFSYKFGEHVAEPATKAASKGLQEPVMAYPAPTAAGSSSVSHGTPYPPLPQQYAAGYGYPPQPMYGGYPPAQSGYGYPPQAGYGYPQQPGYGYPPAQKPKKNKFGLGLGAGLLGGALGGMLIGDMVSDAADYDAGYDAGFDDAGGFDF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1347 279 PANTHER INGRESSION PROTEIN FIC1 1 225 - -
Ssu1g1347 279 SMART C2_3c 5 112 IPR000008 -
Ssu1g1347 279 Gene3D C2 domain 4 138 IPR035892 -
Ssu1g1347 279 ProSiteProfiles C2 domain profile. 1 113 IPR000008 -
Ssu1g1347 279 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 139 IPR035892 -
Ssu1g1347 279 Pfam C2 domain 5 108 IPR000008 -
Ssu1g1347 279 PANTHER PROTEIN SRC2 1 225 - -
Ssu1g1347 279 CDD C2_SRC2_like 5 133 IPR044750 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1347 Ssu-Chr1 29555170 29556009 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1347 - - gmx:100217337 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1347 1 29555170 29556009 Ssu1g1347 1 29555170 29556009 ECH
Ssu6g0311 6 4975919 4979975 Ssu1g1347 1 29555170 29556009 PCT