Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0310 ATGGAGGAATCGAGCCAGCTGAAGCGTGCCGTGATTGATTCCTGGGCTGGGGCAATTTCTGGTGGGATATCACGGACAGTTACCTCGCCCCTTGATGTTATTAAGATTAGATTCCAGGTTCAATTGGAGCCCACGTCTACTTGGGCTTTACTACGCAAGGATTTGGCTGCAGCTGCGGCTGCACCTTCAAAATACACTGGTATGTTTCAAGCAACCAAAGATATTCTTAGAGAAGAAGGCGTACAGGGGTTTTGGCGGGGAAATGTACCGGCATTGCTCATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGACAGAGAATCACATTGATTTGAGCCCTTATCTATCCTACGTCAGTGGGGCATTAGCTGGGTGTGCAGCTACAGTAGGTTCATACCCCCTTGATCTTCTCCGAACCATATTAGCTTCTCAGGGTGAACCAAAGATATATCCAAACATGAGGTCAGCATTAATTGATATCATCCATACTCGTGGATTCCAAGGCTTGTATTCTGGATTGTCACCAACTCTAGTGGAGATTATACCTTATGCAGGACTACAATTTGGCACCTATGATACATTTAAGCGTTGGACCAGGGCTTGGAATCATAGACATTCATATTCCAACGCTGCTGCAGAAGATAACCTCTCTAGCTTTCAGCTTTTGCTTTGTGGGTTGGCAGCTGGAACATGTGCCAAACCTGTCTGTCATCCACTTGATGTCGTCAAAAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAATATGTTTGATGCCATGCAAAGGATACTGCGATTAGAGGGTTGGGCTGGTCTGTACAAGGGGATAATCCCATCAACTGTTAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCATATGAATTGACATCAGATTGGTTAGAGTCCtctttgaattga 1002 0.4441 MEESSQLKRAVIDSWAGAISGGISRTVTSPLDVIKIRFQVQLEPTSTWALLRKDLAAAAAAPSKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKTENHIDLSPYLSYVSGALAGCAATVGSYPLDLLRTILASQGEPKIYPNMRSALIDIIHTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWTRAWNHRHSYSNAAAEDNLSSFQLLLCGLAAGTCAKPVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMFDAMQRILRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESSLN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0310 333 Pfam Mitochondrial carrier protein 126 211 IPR018108 -
Ssu6g0310 333 Pfam Mitochondrial carrier protein 14 113 IPR018108 -
Ssu6g0310 333 Pfam Mitochondrial carrier protein 230 329 IPR018108 -
Ssu6g0310 333 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Ssu6g0310 333 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Ssu6g0310 333 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Ssu6g0310 333 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Ssu6g0310 333 PRINTS Mitochondrial carrier protein signature 87 107 IPR002067 GO:0055085
Ssu6g0310 333 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Ssu6g0310 333 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 3 332 - -
Ssu6g0310 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 211 IPR018108 -
Ssu6g0310 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 327 IPR018108 -
Ssu6g0310 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 112 IPR018108 -
Ssu6g0310 333 PANTHER SOLUTE CARRIER FAMILY 25 3 332 - -
Ssu6g0310 333 Gene3D Mitochondrial carrier domain 4 330 IPR023395 -
Ssu6g0310 333 SUPERFAMILY Mitochondrial carrier 8 322 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0310 Ssu-Chr6 4941230 4945108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0310 1 333 Organic Solute Cotransporters AT3G21390 72.321 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0310 K15108 - gmx:100784986 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0310 6 4941230 4945108 Ssu6g0310 6 4941230 4945108 ECH
Ssu6g0310 6 4941230 4945108 Ssu1g1348 1 29574903 29580236 PCT