Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1348 ATGTCTGCTCCCGTCTCCATTGCCTCCTTCCCCGTCCTCTCTCGCCGgtactttctctctcatccttTGCCCTTTCTCCCGATTCTCCGTGCTGTTGTAGTTGGAAAGAGAAGGGCGTTAGCGGCAATGGAGGGGGAACCGGGCCAGCTGAAACGGGCAATGATTGATGCCTCTGCTGGAGCTATTTCCGGTGGTATATCGAGGACAGTGACGTCACCTCTCGATGTTATTAAGATTAGGTTCCAGGTTCAACTAGAGCCCACATCTTCATGGACTTTACTACGCAAGGATTTATCTACACCTTCAAAATATACCAGCATGCTTCAAGCAAGCAAAGATATTTTTAGAGAAGAAGGCATACAGGGTTTTTGGCGGGGCAACGTGCCAGCTTTGCTCATGGTTATGCCATATACTGCTATACAATTTACTGTCTTACACATGTTGAAGACTTTTGCCTCTGGTTCTTCCAAGACAGAGAATCACATTAATTTGAGCCCTTATCTATCCTATATAAGTGGGGCATTAGCTGGGTGTGCTGCTACTGTGGGGTCATATCCCTTTGATCTTCTCCGAACCATATTAGCTTCTCAGGGTGAACCAAAGGTTTATCCAAACATGAGGACAGCATTAGTTGATATTCTCCAGACTCGTGGCTTCCAAGGCTTGTATGCTGGATTGTCACCAACCCTAGTTGAGATTATACCATATGCAGGCCTACAATTTGGCACCTATGATACATTTAAACGTTGGACCATGGCGTGGAATCGTCGTCAGTATTCAAATCCTACTGCAGAAAGCCTTTCTAGCTTTCAGCTTCTCCTGTGTGGGTTGGCTGCAGGAACATGTGCCAAGCTCGTCTGTCATCCGCTTGATGTGGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGGTTGAACATCGTGCatacaaaaatatgtttgatgCCATGAAACGAATATTACAGAGGGAGGGTTGGGCTGGTCTATATAAGGGGATAGTCCCATCGACTGTTAAAGCTGCACCAGCTGGTGCTGTAACTTTTGTTGCCTATGAATTGACATCAGATTGGCTGGAATCTATTTTGACTTGA 1113 0.4456 MSAPVSIASFPVLSRRYFLSHPLPFLPILRAVVVGKRRALAAMEGEPGQLKRAMIDASAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWTLLRKDLSTPSKYTSMLQASKDIFREEGIQGFWRGNVPALLMVMPYTAIQFTVLHMLKTFASGSSKTENHINLSPYLSYISGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRTALVDILQTRGFQGLYAGLSPTLVEIIPYAGLQFGTYDTFKRWTMAWNRRQYSNPTAESLSSFQLLLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYKNMFDAMKRILQREGWAGLYKGIVPSTVKAAPAGAVTFVAYELTSDWLESILT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1348 370 Gene3D Mitochondrial carrier domain 49 367 IPR023395 -
Ssu1g1348 370 SUPERFAMILY Mitochondrial carrier 51 359 IPR023395 -
Ssu1g1348 370 PRINTS Mitochondrial carrier protein signature 56 69 IPR002067 GO:0055085
Ssu1g1348 370 PRINTS Mitochondrial carrier protein signature 69 83 IPR002067 GO:0055085
Ssu1g1348 370 PRINTS Mitochondrial carrier protein signature 179 197 IPR002067 GO:0055085
Ssu1g1348 370 PRINTS Mitochondrial carrier protein signature 126 146 IPR002067 GO:0055085
Ssu1g1348 370 PRINTS Mitochondrial carrier protein signature 223 241 IPR002067 GO:0055085
Ssu1g1348 370 PRINTS Mitochondrial carrier protein signature 276 298 IPR002067 GO:0055085
Ssu1g1348 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 267 364 IPR018108 -
Ssu1g1348 370 Pfam Mitochondrial carrier protein 165 251 IPR018108 -
Ssu1g1348 370 Pfam Mitochondrial carrier protein 56 152 IPR018108 -
Ssu1g1348 370 Pfam Mitochondrial carrier protein 267 365 IPR018108 -
Ssu1g1348 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 164 250 IPR018108 -
Ssu1g1348 370 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 46 369 - -
Ssu1g1348 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 51 151 IPR018108 -
Ssu1g1348 370 PANTHER SOLUTE CARRIER FAMILY 25 46 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1348 Ssu-Chr1 29574903 29580236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1348 23 370 Organic Solute Cotransporters AT3G21390 71.429 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1348 K15108 - gmx:100803750 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1348 1 29574903 29580236 Ssu1g1348 1 29574903 29580236 ECH
Ssu6g0310 6 4941230 4945108 Ssu1g1348 1 29574903 29580236 PCT