Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0304 ATGTCGATGAGTGAGCGGAAGACTATTGACCTAGAACAGGGATGGGATTTCATGCAGAAGGGCATCACGAAGCTCAAGAACATTCTAGAAGGCTTGCCCGAGCCTCAATTCAGCTCGGAGGACTACATGATGCTTTATACGACCATCTACAATATGTGCACTCAAAAGCCTCCTCATGACTATTCCCAACAACTGTATGACAAGTACAAGGAGTCTTTTGAAGAGTACATCGTATCAACGGTATTGCCTTCTTTGAAAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTGAAGAGATGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGGTTCTTTCACTATTTGGATCGGTACTTTATCGCTCGGAGGTCACTTCCGCCCCTTAATGAAGTTGGGTTGACTTGCTTCCGAGATTTGGTTTACAAGGAACTAAATGGGAAAGTTAGAGATGCAGTTATTTCACTTattgatCACGAACGTGAGGGAGAGCAGATTGATCGAGCTCTATTAAAGAATGTATTAGACATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAATTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCTCATTACTTGCACTCTAGTAGCGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTGTTATCTGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGAATGTTCAggctattttctaaaataccTCGGGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTACCACTGAAGGTATGGCATTGGTGAAGCAGGCTGAAGATGCAGCTAGCAACAAAAAGGCAGAAAAAAAGGATATTGTTGGTCTGCAGGAgcagGTTTTTGTTCGGAAGGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAACGATTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAGTTCAAGTGCAGAACTGCTTGCCTCCTTCTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTAAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTCAAGCTACTTGCCTATATTAGTGACAAAGACTTGTTTGCTGAATTCTATAgGAAGAAGCTTGCTCGGAGGCTTCTCTTTGACAAGAGTGCCAATGATGATCATGAGAGaagtattttgacaaaattgaaGCAACAATGTGGTGGACAGTTTACCTCAAAGATGGAAGGAATGGTCACTGATTTGACACTGGCAAAAGAGAATCAAACTAGCTTTGAGGAGTATTTAAGCAATAATCCCAATGCAGACCCTGGGATAGACTTGACCGTTACCGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTTAATCTTCCTGCAGAAATGatTAGGTGTGTTGAAGTTTTCAAAGAATTTTATCAAACTAAAACAAAGCACAGAAAGCTTACATGGATTTATTCCTTGGGTACCTGTAATATAAGTGGGAAATTTGAGCCCAAAACCGTGGAGCTGATTGTGACAACCTACCAGGCTTCAGCATTGCTGCTTTTTAATTCCTCAGATAGACTTAGTTACTCAGAGATAATGACTCAGTTAAACTTGTCAGACGATGATGTTATTAGACTGCTCCATTCCTTGTCATGTGCCAAGTACAAGATTCTTAACAAGGAGCCAAATACAAAAACAATATCATCCActgattattttgaatttaattctaaatttactGACAAAATGAGGAGAATCaagGTTCCTCTTCCTCCTGTGgatgagaagaaaaaagtaattgagGATGTCGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGGAAAGTTTTGGGCTACCAACAACTAGTCATGGAGTGTGTTGAGCAGCTGGGTCGCATGTTTAAGCCTGACGTCAAGGCAATTAAAAAGCGGATTGAAGATTTGATTTCTCGAGATTACTTGGAAAGAGACAAAGATAACGCTAATATGTTCAAGTACTTGGCTTGA 2235 0.3884 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYKESFEEYIVSTVLPSLKEKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDHEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTTEGMALVKQAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLASFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPNTKTISSTDYFEFNSKFTDKMRRIKVPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANMFKYLA 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0304 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Ssu6g0304 744 Gene3D Cullin Repeats 267 389 - -
Ssu6g0304 744 SUPERFAMILY "Winged helix" DNA-binding domain 659 744 IPR036390 -
Ssu6g0304 744 PANTHER CULLIN 2 743 IPR045093 -
Ssu6g0304 744 Gene3D - 661 744 IPR036388 -
Ssu6g0304 744 Gene3D Cullin Repeats 142 264 - -
Ssu6g0304 744 Gene3D Cullin Repeats 390 503 - -
Ssu6g0304 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Ssu6g0304 744 PANTHER CULLIN 3B 2 743 - -
Ssu6g0304 744 SMART cul_2 420 569 IPR016158 -
Ssu6g0304 744 Gene3D Cullin Repeats 3 141 - -
Ssu6g0304 744 Coils Coil 322 342 - -
Ssu6g0304 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Ssu6g0304 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Ssu6g0304 744 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Ssu6g0304 744 Pfam Cullin family 24 647 IPR001373 GO:0006511|GO:0031625
Ssu6g0304 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0304 Ssu-Chr6 4840354 4847686 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0304 K03347 - gmx:100793682 1473.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0304 6 4840354 4847686 Ssu6g0304 6 4840354 4847686 ECH
Ssu6g0304 6 4840354 4847686 Ssu1g1360 1 29773731 29783139 PCT
Ssu1g0694 1 15407314 15421554 Ssu6g0304 6 4840354 4847686 PCT