Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0694 ATGTCTCTCCCCACCAAACGGTCGGGCACCGCTGGTTCCTCCCCGTCGCCGCCACCCCCTATGAAAAAGGCCAAGTCCCTCCTCCGCGCCCCCTCCGACGACGCCGTTCTGGACCCTTCCTCCATGCCTCTCGACGACGATCTCCCCAGTGCCCGTGCCGCCAATCTCTCCCGCAAGAAAGCCACCCCTCCCCAGCCCGCCAAGAAGCTCCTCATCAAGCTCCACAAAGCTAAACCGACATTGCCCACAAATTTTGAGGAGGATACATGGGCAAAACTAAAGTCTGCCATTTGTGCTATATTTTTGAAGCAACCTAACTCTTGTGACTTAGAGAAACTTTATCAGGCTGTGAATGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCACATATATCTGCAGCACTGCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTCCTATCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGCTGATGATTCGTGGTATAGCCTTGTATTTGGATAGGACATATGTGAAGCAAACAGCAAATGTACGGTCATTATGGGACATGGGCCTACAACTTTTCCGTAAACATCTTTCATTGTCTCCTGAAGTAGAACACAAAACTGTTACTGGTCTTCTACGAATGATTGAAAGTGAAAGAAAAGGTGAAGCAGTGGATAGAACTCTTCTAAACCATCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAgACAAGATTGCAAGAAGAACATGAAAGATGTTTAATCTACTTGGATGCAAGCACTAGGAAGCCATTGATAGCAACAGCAGAAAAGCAACTTCTTGAACGGCATATACCTGCCATTCTTGATAAGGGCTTCGCCATGCTTATGGATGGGAATCGTGTTGAAGACCTTCAAAGAATGTACTCACTCTTTTCAAGGGTCAATGCCCTCGAATCACTGAGGCAGGCCATTAGTTCATACATCAAGAGAACTGGTCAGGGCATTGTTTTGGATGAggagaaagataaagatatgGTTTCATCCCTTCTGGAATTTAAGGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTTCAAGAATGAAGCATTCTGTAACACCATTAAAGATTCATTTGAGCATCTTATCAATCTTCGTCAGAACCGACCTGCAGAGTTGATTGCAAAGTTTTTGGATGAGAAACTTCGTGCAGGTAACAAGGGCACTTCAGAAGAAGAGTTGGAGGGTACACTTGATAAAGTCCTGGTTTTATTCAGGTTCATTCAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTGCTGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAGGACATTGaattatcaaaagaaataaatgagtcCTTCAAACAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGAATTGAAATGAGTGTTCATGTCTTGACAACTGGGTACTGGCCAACATATCCACCCATGGATGTTAGACTTCCTCATGAGTTGAACGTTTACCAGGATATTTTCAAagagttctatctaagcaaatACAGTGGAAGGCGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTGTTAAAGGCAGAGTTTCCTAAAGGGAAAAAGGAGCTGGCTGTCTCCCTATTTCAGACTGTTGTTCTGATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATTGAGGATAAGGAACTGAGAAGGACTCTGCAATCACTTGCCTGTGGAAAAGTTCGTGTCCTACAAAAGTTGCCAAAGGGTAGAGATGTGGAGGATGATGActcatttgtttttaatgaagGGTTTACAGCTCCTCTTTACCGTATAAAGGTGAATGCAATTCAGTTGAAGGAGACAGTGGAGGAGAACACAAGCACCACTGAAAGAGTTTTCCAAGACCGTCAATATCagGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACCCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCAATCAAACCTGCTGACTTGAAGAAAAGGATCGAAAGCCTGATTGACAGGGAGTATCTGGAGAGGGACAAGAACAACCCTCAAATATACAATTACCTGGCATAG 2361 0.4197 MSLPTKRSGTAGSSPSPPPPMKKAKSLLRAPSDDAVLDPSSMPLDDDLPSARAANLSRKKATPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPNSCDLEKLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERKGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVETRLQEEHERCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFAMLMDGNRVEDLQRMYSLFSRVNALESLRQAISSYIKRTGQGIVLDEEKDKDMVSSLLEFKASLDTTWEESFFKNEAFCNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0694 786 Gene3D Cullin Repeats 429 540 - -
Ssu1g0694 786 PANTHER CULLIN 48 786 IPR045093 -
Ssu1g0694 786 Gene3D Cullin Repeats 327 428 - -
Ssu1g0694 786 Pfam Cullin protein neddylation domain 718 778 IPR019559 -
Ssu1g0694 786 SMART Cullin_Nedd8_2 715 780 IPR019559 -
Ssu1g0694 786 MobiDBLite consensus disorder prediction 1 69 - -
Ssu1g0694 786 PANTHER CULLIN-4A 48 786 - -
Ssu1g0694 786 ProSiteProfiles Cullin family profile. 430 659 IPR016158 -
Ssu1g0694 786 ProSitePatterns Cullin family signature. 759 786 IPR016157 GO:0006511|GO:0031461|GO:0031625
Ssu1g0694 786 Gene3D Cullin; Chain C, Domain 2 545 700 - -
Ssu1g0694 786 SUPERFAMILY Cullin homology domain 427 697 IPR036317 -
Ssu1g0694 786 Gene3D Cullin Repeats 212 325 - -
Ssu1g0694 786 SUPERFAMILY "Winged helix" DNA-binding domain 698 786 IPR036390 -
Ssu1g0694 786 SUPERFAMILY Cullin repeat-like 84 426 IPR016159 -
Ssu1g0694 786 Gene3D - 713 786 IPR036388 -
Ssu1g0694 786 SMART cul_2 460 609 IPR016158 -
Ssu1g0694 786 Pfam Cullin family 90 687 IPR001373 GO:0006511|GO:0031625
Ssu1g0694 786 Gene3D Cullin Repeats 77 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0694 Ssu-Chr1 15407314 15421554 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0694 K10609 - gmx:100805491 1484.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0694 1 15407314 15421554 Ssu1g0694 1 15407314 15421554 ECH
Ssu1g0694 1 15407314 15421554 Ssu6g0304 6 4840354 4847686 PCT