Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0302 ATGCAAGCCTATAATACTGAGTTCGAGGAAGGAGAGGCTTTCTTCTGTTACAAGGATGATTATGACGACAACATTGACCTTGATTCTCTCTCTTACATTGATGAGAGGATTCAGCATGTTCTGGGTCATTTCCAAAAGGACTTTGAAGGAGGTATTTCTGCTGAGCGTTTGGgTGCAAAATATGGTGACTATGGCTCCTTTTTACCTACCTGTGAACGCTCTCCTCCTTTGCGATCTTGTCCAAAGACTCCACAAAAACATAATAGTTCTCCGAAATCTCCTAGCAATCTCAACATGGCgGCTGCATTTCATAACTCAAAAGCACCTTCAAATATGCCTCCTTCTATGAGGCTTGGAACTGCTTCCCATAATGCGCATCCATTTCGTAACTTAAGAGTACCTTCGGTGGATGACTCAGTAAAGAACACAGGAATTTCCTCCAATAAAGTAATAGAGAAGTGCACTTGGAAAAATGATTGTGCAAATAAGTCGGAAAATTTGACTGACCAAAGAACACTGAAGTTCCGAATCAAAGTAAAATCAGATATTTTAGCAAAAAAGAATGCAGAAATTTACAGTGGTCTTGGACTTGATGACTCTCCGTCATCATCAATGGAGAACAGCCAAGAAGAAAGTGAAGATATGCCACATGCGTCTCAAGAGACCCCTGAAGAATCTCCAACTGGCATTGTTCAGGTTATGACTTCCTTCACTATCCCTGGAGGTGTGCTAATATCACCTCTACATGACAGTCTGCTCTACTTGATAAGAAAGGAAAATGCTCTTGGAGACAGCAGACCCATGTCTTCTCTTAATGGTCATCAAGAACATTATTCCATGTCTACTGACGAATCAGATTCTTTTGTGGGGGATGGACATTTGTTGAAGAAAAGGAAAGTGACAGTGGTGGACCAAAGTGAAAAACTGCATATGAATGGTAACTGTTCTGAGAATGATATGACATTGCATATGAAGAAAAGATTAGGAAATAGAACTCCAGATTGTAAAGATTTTCTCTCTAATGACCTGAGAAGCACACCACTGTCAAGTTCAATTTGTGACGCTGGTGAAACAGCTGAAGTCACTGGTAAGGCTTTTGAAGTATCCAAGGAGGTTGATAAAGATGGTGTGGAATGTAGAATGGTTTCCACTGAAGCAGTGAAGGAGGATTCACTAGAGTCAATATCTGGTCAGGATTTTGACAAGATTGAGAAGCAAAATATGGGAAGTAGctttatgaaaaaagttttagaGCATAAAATGGAAATTTCTCAGAATAATAATTCTACTGATCCTAAGAATAATAGCAAGTGTAACgcttttgaaatttcaaaaaggaTTAAGTGTGGGGCAGTGAAATGTAAGGTGGATCAAGATACTCAAAAGTGTGAGACTAATCAGAAAGGAAAGGTAAAATCTGAAAGCAAGAATGAGTCAAAAGGTGAAAGGAGTCCTGGAAAAGTTGTGACTAATGCTGAAAAAGATATCATTGTTACTAGCAATAATGCAATGGTAAATGATAGAAAGAGTACTGGCATTGGTGTTACTTCTTCTAAAAgtaaaatgcataaaataaagtCACTGAAGGATGATAAGGTCAGAGATTGTGACAGAGATtcattgaaaggaaaaaaaactgaACGGAAAGCTGATGGAATAGATCCAATTGATGGGCCTCCCCTTAATAAGGCTACAGTAAATGCTAACCTTGATCATGTTGAAAAGAGTACGTATAGGGTTAAAGTAAAGGAAAGATCAAGTGGCAATAAAGTGGTTAATCAGTTGTCAGCTGGGCCATGTGTAAAAGATGCTACAGGTGCATTTCCTATTGctgaaaataaaccaatttctGAGATGGTTCCGCcatcagcagcagcagcagcagcagcaccTCAACTTATCGAAGAAGATTGGGTATGCTGTGACAGTTGCCAGAAATGGCGGCTTCTACCTATGGGTTTAAAGCCAGAGCAGCTTCCAGAGAAATGGTTGTGTAGCATGCTATATTGGCTGCCTGGAATGAATCGGTGTAACATCAGTGAGGAGGAGACGACAAAAGCTCTTTATGCTTTATATCAAATGCCGATTTCTGAGGGTCAAAGTAACATGCAAAGCCATGCCACTGGACCTGAAACTGGATTGAGATCTGTTGATGCTCTGCAACTTGGCCTGAATCACAAAAAGTCCATTTCTGATGTAATGCTTGATCGAGGAAAGAAGAAACATGGTATTAATGAAAAGGCAAAGTTAGGAATCAATAATGACATGCATCAGTTGTCAAATACAGAAAAGAACAATGCTCAAGAGTCTGTGAAAAATAGAAGCTTGAATGACGTGAATCAGTGGCCTGCAGACTCAAACCGCATGAAGAAATCTAATTCTAAACATTCAAGCAGGTTGAACAATTtgatagaagagaaaaacacaCCTAAGGCAAAAGAAAAGCTAACGAATGGAGGTGACAGAAATCATGTTAGATTGAAACTTAAGATGGAGGATAATCAACATGGATCTGGAACTCCTAAGAAATCTAAGACTGAAGATATTTGCTATGCTGATAAACAACTGAATCCTGGCATGGAATTTAGAAAGGTGGGTCTAAACTCGAGAAATGGTTTACCGACAAAGGCTAGTGGGAAAAATATGAGGAAATATGATGATTATTGTTTGTCTGACAATCTAGAGGACAAATTGGCATTTCCGGTAAAGAAAGGAGACCGGGCAGAGTTTTTGTCAGATGATGGTTCATTGGATGCTACAAACAGCAGCAAAAGTGGTTcaattaagaaaaggaaaatgagtGACTGGTTGGATAATgataaacataacaaaacattGTCCTTGGAAGGTGATATGCAATGTGGTAAAGAGGGCAATGTAAATCGGAAGGAGAAGAAGTATGTAGTTTTGAATACAGAGGCAAAATCCGTAACCGACAGTGATGATAAATTGATTAGAGAAAGTGGGATGAAGCGAGTTTTCTTGTCAGACAGCAGGGACGAAATGGCTGTTGGGACAGAGGTGAAAAGTGTTAATAAGGTCCAGCAGccaagaaaacacaaaaaaagtgTTGCTTCGTACCAAGCTTTGAATTGTTTTGATCCATTGGGTAAGGATTTAGGGTCTGGACAACTTTCATTGGCAGCAACTTCAAGCTCTTCTAAGGTTTCAGGGTCTCATAAAGCTAGAACTAACCTTGAAGATGTCAGAGGCTCACCAGTAGAATCTGTTACCTCATCACCTTTGAGGACCTCCAACATGGACAAACGTATTTTGGCAGCAGGGGACACATCAGAAAAAGATGACGCTAGAAAAGGTGGTCTAAAAGGTTTGGATAATAGGGAGGGGAAGTTATCAGTAAAAATGGAGAGAATTTCATATGACATACATCCTGCACATGGTAATTATGGCAGTGGTTCACATCATGAGGAGAAAATGAACAAGAGTAATCAGGAAAATGCACTTTCTTGGCAGAAATCTGGTAAGGTTACATCATTGCGGGTCAAGGAAAAGGACAGAAATTCTGGTTCTGAGGTTAGTAGGCATAAGGAGAAGGTTTCAGCTTCAGATAAtgatttttccaaaatttgtgTGAGTTATGAGTTAGCAGTTGATCCCAATCATCATGCTTCTGGTACTGAGACAAGAAATGATGTTAAGAACAGTTCTCTGAAGTCTAAACACAAGACTGACAACCTTAGTAAGAAAAATTCTTCAAGGCATTGGTCAAATGAAACTGGAAAACAAACTGAGctaaaacaaaaagatattggGAATCCAGTTCTGAAAGTGAATGCTCCATGTAACACTAATAGGAAGAATATGTCCCAGCAGAACCTAATTCAGAACTTTGAGGAAGAAAACAAAGCTAATCCAGTATGCACTGGATCAAGATATGGGAAAGCCACAGTTATCTCATCTTCTGAGGGTAAAGTGAAAAGGGAAACATTATATGTGGCTTCTAGAACTGCACCTGAGTTGCAGAAGGGAGATATGTCTAATGGGCATCCAGTCCATGCATCTGGCAATGGTGATATTCCCAAGTTTGTAAGAAATCCAGTTGATGTTAGTTGCAAGGTTGGAGTTAATTGCAGTTCAGGAAGTTCCGTACCTGATGGACAGCTCAGTGAGTCAAGTCCCGTGACAACAAATTCTAGCCAAACTGCCTCTAGCATTCTGGAAGAAGCCACAAAGCTAAAGGATTCTGCAGATCATTATAAGGACTCTGGTTTTGAGTTTGAAAGTAATGAGACTTATTTTAAAGCTGCCTTGAAGTTTCTGCATGGAGCATCACTTCTAGAAAATTCTCACAGCGAGAGTAGCAAGCATGGAGAGATGAgtcaaatgcaaatatatactACTACAGCTAAACTTTTTCAATCCTGTGCCCATAAATATGAAAGACGCCAAGAAATGGCTGCAGCTGCTTTGGCATATAAATGCATGGAGGTGGTATACATGAGACTGGTTTACTGTAAACATTCTAGCATAAACAGGGATTGGCATGAGTTGCAATCAACTCTACAAATGGTTTCTCAAGGTGAATCTCCTTCATCCTCTGCATctgatattgataatttaaataacCTGGCGGTAGTGGATAAGGCTACTTTGACAAGGGGTTCTAATACTCATGTTGCTAACAATCAAGTCATATCTGCTTGCAATCGCCCAAATATTGTCAGGCTTCTTGAATttACTCAAGACATAAGTTTTGCAATGGAGGCTTCTAGAAAATGCCATAGCACTTTCATGGCTGCTAATTTGAACATGGAAGAGGCACAGAATAAGGATTGCATAACTTCTATTAGGAAGGTTGTTGATTTCAGCTTCCAAGATGTAGATGAGCTTGTCCATCTGGTTTTGACTGCAACAAAAGCAATAACTCGTGCTGGTCTTGGTGGTGTTAGAGATTAA 4917 0.3771 MQAYNTEFEEGEAFFCYKDDYDDNIDLDSLSYIDERIQHVLGHFQKDFEGGISAERLGAKYGDYGSFLPTCERSPPLRSCPKTPQKHNSSPKSPSNLNMAAAFHNSKAPSNMPPSMRLGTASHNAHPFRNLRVPSVDDSVKNTGISSNKVIEKCTWKNDCANKSENLTDQRTLKFRIKVKSDILAKKNAEIYSGLGLDDSPSSSMENSQEESEDMPHASQETPEESPTGIVQVMTSFTIPGGVLISPLHDSLLYLIRKENALGDSRPMSSLNGHQEHYSMSTDESDSFVGDGHLLKKRKVTVVDQSEKLHMNGNCSENDMTLHMKKRLGNRTPDCKDFLSNDLRSTPLSSSICDAGETAEVTGKAFEVSKEVDKDGVECRMVSTEAVKEDSLESISGQDFDKIEKQNMGSSFMKKVLEHKMEISQNNNSTDPKNNSKCNAFEISKRIKCGAVKCKVDQDTQKCETNQKGKVKSESKNESKGERSPGKVVTNAEKDIIVTSNNAMVNDRKSTGIGVTSSKSKMHKIKSLKDDKVRDCDRDSLKGKKTERKADGIDPIDGPPLNKATVNANLDHVEKSTYRVKVKERSSGNKVVNQLSAGPCVKDATGAFPIAENKPISEMVPPSAAAAAAAPQLIEEDWVCCDSCQKWRLLPMGLKPEQLPEKWLCSMLYWLPGMNRCNISEEETTKALYALYQMPISEGQSNMQSHATGPETGLRSVDALQLGLNHKKSISDVMLDRGKKKHGINEKAKLGINNDMHQLSNTEKNNAQESVKNRSLNDVNQWPADSNRMKKSNSKHSSRLNNLIEEKNTPKAKEKLTNGGDRNHVRLKLKMEDNQHGSGTPKKSKTEDICYADKQLNPGMEFRKVGLNSRNGLPTKASGKNMRKYDDYCLSDNLEDKLAFPVKKGDRAEFLSDDGSLDATNSSKSGSIKKRKMSDWLDNDKHNKTLSLEGDMQCGKEGNVNRKEKKYVVLNTEAKSVTDSDDKLIRESGMKRVFLSDSRDEMAVGTEVKSVNKVQQPRKHKKSVASYQALNCFDPLGKDLGSGQLSLAATSSSSKVSGSHKARTNLEDVRGSPVESVTSSPLRTSNMDKRILAAGDTSEKDDARKGGLKGLDNREGKLSVKMERISYDIHPAHGNYGSGSHHEEKMNKSNQENALSWQKSGKVTSLRVKEKDRNSGSEVSRHKEKVSASDNDFSKICVSYELAVDPNHHASGTETRNDVKNSSLKSKHKTDNLSKKNSSRHWSNETGKQTELKQKDIGNPVLKVNAPCNTNRKNMSQQNLIQNFEEENKANPVCTGSRYGKATVISSSEGKVKRETLYVASRTAPELQKGDMSNGHPVHASGNGDIPKFVRNPVDVSCKVGVNCSSGSSVPDGQLSESSPVTTNSSQTASSILEEATKLKDSADHYKDSGFEFESNETYFKAALKFLHGASLLENSHSESSKHGEMSQMQIYTTTAKLFQSCAHKYERRQEMAAAALAYKCMEVVYMRLVYCKHSSINRDWHELQSTLQMVSQGESPSSSASDIDNLNNLAVVDKATLTRGSNTHVANNQVISACNRPNIVRLLEFTQDISFAMEASRKCHSTFMAANLNMEEAQNKDCITSIRKVVDFSFQDVDELVHLVLTATKAITRAGLGGVRD 1638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 508 562 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 75 98 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1366 1389 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1050 1115 - -
Ssu6g0302 1638 PANTHER CW-TYPE ZINC FINGER 1 1632 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 265 285 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 81 98 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1131 1190 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 194 227 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 462 489 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1093 1115 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 800 845 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1327 1346 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1207 1260 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 753 845 - -
Ssu6g0302 1638 Pfam CW-type Zinc Finger 638 683 IPR011124 GO:0008270
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1211 1252 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1071 1086 - -
Ssu6g0302 1638 ProSiteProfiles Zinc finger CW-type profile. 632 685 IPR011124 GO:0008270
Ssu6g0302 1638 PANTHER CW-TYPE ZINC-FINGER PROTEIN 1 1632 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 1164 1190 - -
Ssu6g0302 1638 Gene3D - 629 687 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 754 788 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 462 492 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 264 285 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 523 554 - -
Ssu6g0302 1638 MobiDBLite consensus disorder prediction 912 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0302 Ssu-Chr6 4814204 4822852 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0302 - - gmx:100793863 2657.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0302 6 4814204 4822852 Ssu6g0302 6 4814204 4822852 ECH
Ssu6g0302 6 4814204 4822852 Ssu1g1362 1 29844951 29853229 PCT