Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1362 ATGAAGGAGAATACTGAGCTTGAGGAAGGAGAGGCTTGCTATTATAAGGGTGATGATGAAGGCAAAATTTACCTTGATTCTCTCACTTACATTGATGAGAAGATTCAACATGTTCTTGGCCATTTTCAAAAGGACTTTGAAGGTGGTGTGTCTGCTGAGAATTTGGGTGCAAAATTTGGTGGCTATGGTTCGTTTTTACCTGCCCAAGAGCGCTCTTCTTGTGTTTTGTCTCATCCAAGGACTCCACAAAGAAACCACAGCTCACCAAATTCTAATATCAATCTCCACAAGGAGGCTGTGTCTCATAATACAAAAGCACCTTCAAATGTGCCTCCTTCTGCAAGGCTTGAAAATACCTCCTGTAGTTCACATTCATTTCGTGATTTGAGAGCAGCTTCAGTAAATGACTCAGTGAAGAAAGAATGTGGAATTTCTTCCAGTGATATAGGTGAGAGGAGCACTTTGAAAGATGATACTACAAAAAAGCCAGGAAATTCAACTGACCAAAGGACACTGAAGTTTCGAATCAAAATGAAATCTAATATCTTAGCACAAAAGAATGCAGAAATTTATAGTGGCCTTGGGCTTGATAACTCTCCCTCTTCCTCAATGGGGAGCAGCCCTGTGGAAAGTGAAGGCATGCCACCTGTATCTCAAGCGAATGCCGAAGATTCTCCAACTGGCATTATTCAGGTTATGACTTCCTTTCCTATCCCTGGGGGTGTTCTAATATCACCTCTGCATGAAAGTTTGCTCTGCttgataaaaaatgatagaGTTATTGGAGACAGCAGATATTTGTCCTCTCTTAATGGTCATCAAGATCCTTGTTCCATGTCTACTGATGAATCAGATTCTTTTGTGGGGGATGGACATTTGAAGAAGAGGACAGTGAGAATAGTGAGACAAAGTGAAAAGCAGTTGGAATTGAAGCATATGAATGGCACTCTTTCTGAGAAGGATACAACGTTGCATACAAAGAGAAGATTAGGAAATAGAACACCAGATCGTAAAGATTTCCTCtctaatgaattgaaatgtacaCCTCCTTCAAGTTCGATTTGTGATGCTGGTGAAACTGCTGAAGTCACTGCTAAAGCTTCTGAAGCCTCCAAGGAGTTTAATGAGAATGGGGTGCAAGGCAGAATTGTTTCCATGGAAGCATTGAAGGAGTCATCGTTGGAGTCAATATCTGGTCAGGATGAAAAGCAAAATGCAGGAAAtggttttatgaaaaatgctgTAGAGCATAAACTGGAAAATTCACACAAGGATAATTCTACGGACCCCAAGAATAATAACATGCGTAATACTTTCGTGACTTCCAATAAGGTTGAACGTGATGCAATAAAATGTAAGGTAGAGAAGTATGAGACCCATCAGAAGGTAAAGGTTGTGTCTGAGCAGAAGAATAAGTCAAAAGGTGATCAGAGTCCTGGAAGAGCTGAGGCTGTTGCAAGAAAAGATAGCTTTGATGGTACTAATAATGCAATGGTAATTGATAAAGGGAGTACTGGCTTTGACAATACTTGTAGAAGTAAAATGAATAAGTCAAAGTCACTGAAGCACAAAATGTTCAGTGATAGTAATAGGGAtttattgaaagaaagaaaatcagaATGGAAAGTTGACAGTCTTGCTGGTAATGGTGCTACAAAAAACGCTAACATTAGTAATGGAAAACAGAGTGCATTTGAGCCTAAAGCAAAGGAAAGACCAAGTGGCCATAAAGTGGTCAACCAGTTGCTAGCTGGGCCATGCATAAAAGATACTTCAGCTTCACTTCTTATTGCTGAAAACAACCCTGCCCCTGAGATGATTCCATCAACAGTAGCAGCACCTCAACTTATTGAGGAGGATTGGGTATGTTGTGACAGATGCCAGAAATGGCGGCTACTACCTTATGGTATAAAGCCAGAGCATCTTCCAGAGAAATGGTTGTGTAGCATGCTAAATTGGCTGCCTGGGATGAATTCTTGTGACTTCAGTGAGGATGATACAAAAAATGCACTTTACGCCTTATATCAAATGCCAATTTCCGAGGGTCAAAATAATATGCAAAGCCATGGCACTGAAACTGCAATTGGAGTGAGCTCTACTAATGCTTTGCAATATGGCCTGAATCACAGAATATCCAGTTCTGATATGTTGTCTGATCGAGGGAAGAAGAAACATGTTATTAAGGAAAAGACAATGTCAGGAACTAATAATGACGTGCTTCAGTTCACAAATTCTGCAAAGACCAATGCTCAAGTATCTGGAAAAAATAGAAGCTTGAACAGCATGAATCAGCATCCTGCTGACTTAAAGCCGATGAAGAAGACGAGTTCTTCTAAACATCTTAGCAGGCTTGACAACATGATAGAAGAGAAACTTGTGcctaaagataaagaaaagcaAGTAAATGGAGGTGACAGAAAGCATGTCAAATTGAAACGTAAGATGGATGCTGATCAATATAAATCTGGAACTCCTAAGAAATCAAAAACTGGAAATGTTTGCTATGCTGATAAACAATTGAATCCTGGCATGGGCCTTGAGAAGGTGGCTCtatattcaagaaataatttaccAACAAAAGCTAGTGGGAAGGATATGAGGAACTATGATGAGTATTGTTTATCTGAGGATGTAGAGGACAACAGATTCCCAGTCACTGTAAAGAAAGAGGGAGATCAGGCTCAGGTCTCGTCTGGTGGTGGTGGGTCCTTGGATGTGAAAAACAGCATTAAAAGTGATGGTTTAGtgaagaaaaggaaattaaaggACCGGCTGGATGATGAAAAGCATAACAACTCATACTCCTTGCATGGTGAAAAGCAGTATGGTGAAGAGGGCAATGCAAGTGAACttaggaaggaaaagaaatacagAATTTTGAATAAAGAGGCAAAATCAGTAACTGAAGGTGATGATAAATTAAGTAAAGGTGGGATGAGGGAAGTTTACTTGTCAGGCAATAGGGACCAAATGGCTGTTGGGACAGAAGTAAGATTTGTTGATAAAGGCAACCAACTAAGGAAGCACAGGAAAAATATTGCATCTATTCATGCTTCGGATGGTATTGATCAATTGGGCAAGGATTTGGGCTCTGAACTGCTTTCATTGGCGGCAACCTCAAGCTCTTCTAAAGTTTCAGGGTCtcataaaactaaaatcaactttgaAGATGTGAGAGGTTCACCTGTTGAATCTGTTACCTCGTCACCTTTGAGGGCTTTCAACTTGGATAAGCATATTTTGGCAGGGGACACTTCAGTGAAAGAAGTTGCTACAAAAGGCCGTCTCTCTTCAGTAAGTTCCAGGAGAAGTGTGGATAACAGGGAGGGAAAGCTATCAGTAAATTTGAAGGTGGATAGAATTTCGCATGACTTACATCCTGCATCCCACAAGTTATCTTCAGTAGAGTACCAGGTTGAGGATACTAAAGACAAAGCCAGGGTCGAAGCTAAAAAATCTTCTGAACTAAAGAATAATCATTTGCTTGAAGGTGGTGTTCATGTTGAACAACCTGGCTATTGTGCTAATGGTATACGTCATGAGGAGAAAGTAAACAAGGACAAACAGGAAAGTGAACTTTCTTGGCAGAAATCTGGTAAGGTTACATCATTGCACATCAAGGAGAAGGGCAGAAAGTCTGGTTCTCATGTTAGTACAGATAAGATGAAGATTTCAGTTTCAGAGACTGGTGATTCAAAAAATAGTGGGAGGTATGATTCAGTGGTTGATCCTAGTAATCATGCATCTGGTGCTGGGACAAAAAATGATGCTAAATATACTTCTCTTAAGTCTAAAAGCGAAATTGACTGTATTAATCAAAAAAGTGCTTTAAGATATGGGCCGAATGAAACTGGAAAGCAAACTGAGCTAAAACAAGGAGACTTAGAAAATTCAGTTCCGAAGATGGATGCTCAATGTAGCACTGATAGAAAGACTATCTCCCGGCAAAACCTGACTCAAGATTTTGAGGAAGAAAACAAAGCTAATCATGTAAGCACGGAATCAAGAGTTGGGCAATCCAAAGTTCTCTCATCTGCAGTGGGTGAAGTTAAAAGGGAAACATTGAATGTGGGTTCTAGAACTGTACCTCATTATCAAAAGGGAAGCATGTCTAATGAGCATGCTATCCATGTTTCTGGCAATGGTGATTTGGCCAAGTCAATGAGAAATTATGCTCATGTTAGTAACAATGCTGTAGTTAATTATAGTTCTGGAAATTTTGCGTCTGATCAGCAACTCACTGTTTCAAGTCCTTTGAGAACAAATTCTAACCAAACTGCTGTTGACACCCTGGAAGAAGCCACAAAACTAAAAGATAGAGCAGATAATTATAAGAACTCTGGGTTTGACTTTGAAAGCAATGAGACTTACTTTCAAGCTGGTTTGAAGTTTCTTCACGGAGCATCTCTTTTAGAAAATTGTCACAATGAGAGTAGCAAGCATGGGGAGATGAGTCAAGTGCAAATTTTTGCTACTGCAGCCAAACTTTTCGAATGCTGTGCCCATGAATATGAAACTTGCCAAGAAATGGCAGCTGCTGCTTTGGCATATAAATGCATGGAGGTGGCCTACATGAGAGTGGTTTACTGTAAAAATTCTAGTGCTAACAGAGATCGAAATGAGTTGCAATCAACTCTTCAAATGATTTCTCAAGGTGAATCTCCTTCATCTTCTGCGTCCGATGTTGATAACCTTAACCATCAGGCAGCAGCGGATAAGGCTACTTTGCCCAGGGGTACTAATACTCATGTTGCTATCAACCAAGTCATATCTGCTCGAACTCATCCAAATTTAGTCAGGCTTCTTgattttACTCGGGACATACAGTTTGCAATGGAGGCTTCTAGAAAATGTCAGAGCACTTTCACGGCTGCTAATGTGATCATGGAAGAATCACAGAATAAGGACTGTATAACTTCTATTAGGAGCGTTATTGATTTCAGCTTCCATGATATAGAGGAGCTTGTACGTCTGGTTTGGACCGCAACAAAAGCCATAAGTCGTGCCGGTCTTGGTGGTGCTAGAGATTAA 5031 0.391 MKENTELEEGEACYYKGDDEGKIYLDSLTYIDEKIQHVLGHFQKDFEGGVSAENLGAKFGGYGSFLPAQERSSCVLSHPRTPQRNHSSPNSNINLHKEAVSHNTKAPSNVPPSARLENTSCSSHSFRDLRAASVNDSVKKECGISSSDIGERSTLKDDTTKKPGNSTDQRTLKFRIKMKSNILAQKNAEIYSGLGLDNSPSSSMGSSPVESEGMPPVSQANAEDSPTGIIQVMTSFPIPGGVLISPLHESLLCLIKNDRVIGDSRYLSSLNGHQDPCSMSTDESDSFVGDGHLKKRTVRIVRQSEKQLELKHMNGTLSEKDTTLHTKRRLGNRTPDRKDFLSNELKCTPPSSSICDAGETAEVTAKASEASKEFNENGVQGRIVSMEALKESSLESISGQDEKQNAGNGFMKNAVEHKLENSHKDNSTDPKNNNMRNTFVTSNKVERDAIKCKVEKYETHQKVKVVSEQKNKSKGDQSPGRAEAVARKDSFDGTNNAMVIDKGSTGFDNTCRSKMNKSKSLKHKMFSDSNRDLLKERKSEWKVDSLAGNGATKNANISNGKQSAFEPKAKERPSGHKVVNQLLAGPCIKDTSASLLIAENNPAPEMIPSTVAAPQLIEEDWVCCDRCQKWRLLPYGIKPEHLPEKWLCSMLNWLPGMNSCDFSEDDTKNALYALYQMPISEGQNNMQSHGTETAIGVSSTNALQYGLNHRISSSDMLSDRGKKKHVIKEKTMSGTNNDVLQFTNSAKTNAQVSGKNRSLNSMNQHPADLKPMKKTSSSKHLSRLDNMIEEKLVPKDKEKQVNGGDRKHVKLKRKMDADQYKSGTPKKSKTGNVCYADKQLNPGMGLEKVALYSRNNLPTKASGKDMRNYDEYCLSEDVEDNRFPVTVKKEGDQAQVSSGGGGSLDVKNSIKSDGLVKKRKLKDRLDDEKHNNSYSLHGEKQYGEEGNASELRKEKKYRILNKEAKSVTEGDDKLSKGGMREVYLSGNRDQMAVGTEVRFVDKGNQLRKHRKNIASIHASDGIDQLGKDLGSELLSLAATSSSSKVSGSHKTKINFEDVRGSPVESVTSSPLRAFNLDKHILAGDTSVKEVATKGRLSSVSSRRSVDNREGKLSVNLKVDRISHDLHPASHKLSSVEYQVEDTKDKARVEAKKSSELKNNHLLEGGVHVEQPGYCANGIRHEEKVNKDKQESELSWQKSGKVTSLHIKEKGRKSGSHVSTDKMKISVSETGDSKNSGRYDSVVDPSNHASGAGTKNDAKYTSLKSKSEIDCINQKSALRYGPNETGKQTELKQGDLENSVPKMDAQCSTDRKTISRQNLTQDFEEENKANHVSTESRVGQSKVLSSAVGEVKRETLNVGSRTVPHYQKGSMSNEHAIHVSGNGDLAKSMRNYAHVSNNAVVNYSSGNFASDQQLTVSSPLRTNSNQTAVDTLEEATKLKDRADNYKNSGFDFESNETYFQAGLKFLHGASLLENCHNESSKHGEMSQVQIFATAAKLFECCAHEYETCQEMAAAALAYKCMEVAYMRVVYCKNSSANRDRNELQSTLQMISQGESPSSSASDVDNLNHQAAADKATLPRGTNTHVAINQVISARTHPNLVRLLDFTRDIQFAMEASRKCQSTFTAANVIMEESQNKDCITSIRSVIDFSFHDIEELVRLVWTATKAISRAGLGGARD 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 1278 1311 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 465 490 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 465 488 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 1278 1294 - -
Ssu1g1362 1676 Pfam CW-type Zinc Finger 621 665 IPR011124 GO:0008270
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 1202 1218 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 752 780 - -
Ssu1g1362 1676 ProSiteProfiles Zinc finger CW-type profile. 615 668 IPR011124 GO:0008270
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 549 563 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 549 575 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 891 905 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 148 170 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 911 935 - -
Ssu1g1362 1676 PANTHER CW-TYPE ZINC FINGER 1 1671 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 195 223 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 73 121 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 1219 1257 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 888 950 - -
Ssu1g1362 1676 Gene3D - 615 670 - -
Ssu1g1362 1676 PANTHER CW-TYPE ZINC-FINGER PROTEIN 1 1671 - -
Ssu1g1362 1676 MobiDBLite consensus disorder prediction 1184 1257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1362 Ssu-Chr1 29844951 29853229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1362 - - gmx:102667636 2659.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0302 6 4814204 4822852 Ssu1g1362 1 29844951 29853229 PCT