Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0206 ATGGCAAGCAAGGAGTCAAAGTTCCCACCTCAGAGCCAGGAAACTCAGCCAGGAAAAGAGCATTTAATGGAACCACTCCCACAAGCCATACACCCTGACCACAAGCCCGCCAATAAGCTTCAGGGAAAGGTGGCGTTGGTGACAGGAGGTGACTCGGGAATTGGCAGAGCGGTTTGTCTGTGTTTCGCAAGAGAGGGTGCAACCGTGGCCTTTACATACGTAAAGGAGCATGAGGAGAAGGATAAGGATGACACTCTAAAGATGCTGCTAGAAGCTAAGGCAAGTGGTGCAGACGATCCATTGGCAATAGCGGCGGATATTGGCTTTGATGAGAACTGCAAACAGGTCATTGACCTAGTTGTGAAAGAATACGGGCGCCTTGATGTTCTAGTGAACAATGCAGCTGAGCAGCATTTGACAAACTCCGTAGAGGAAATCACACAACAGCAACTTGAAAGAGTCTTCGGGACCAATATCTTTTCACAGTTCTTTTTGGTCaaGCATGCTCTGAAGCACATGAAAGAAGGGAGCTGCATCATCAACTCTACTTCAGTTAACCCCTACGATGGGAATCCAGAAGCGTTGGACTACACTGCTACTAAGGGAGCAATTGTTGCCTTCACTAGAGGTCTTTCTCAGCAGCTGGTTAGTAGGGGAATTAGGGTGAATGCTGTGGCACCGGGTCCAGTTTGGACGCCATTACAACCCGCTTCCAAGCCTGCTGAGATGGTTCAGAACTTGGGGTGCGAGGTGCCAATGAAGCGTGCGGCTCAGCCTAGTGAGATTGCACCGTGTTATTTGTTCTTGGCTACGTGTCAGGACTCTTCCTACTTTACTGGCCAAGTCCTCCATCCAAATGGTGGGACGATCGTCAATGCTTAA 882 0.4932 MASKESKFPPQSQETQPGKEHLMEPLPQAIHPDHKPANKLQGKVALVTGGDSGIGRAVCLCFAREGATVAFTYVKEHEEKDKDDTLKMLLEAKASGADDPLAIAADIGFDENCKQVIDLVVKEYGRLDVLVNNAAEQHLTNSVEEITQQQLERVFGTNIFSQFFLVKHALKHMKEGSCIINSTSVNPYDGNPEALDYTATKGAIVAFTRGLSQQLVSRGIRVNAVAPGPVWTPLQPASKPAEMVQNLGCEVPMKRAAQPSEIAPCYLFLATCQDSSYFTGQVLHPNGGTIVNA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0206 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 290 IPR036291 -
Ssu6g0206 293 PRINTS Glucose/ribitol dehydrogenase family signature 44 61 IPR002347 -
Ssu6g0206 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Ssu6g0206 293 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Ssu6g0206 293 PRINTS Glucose/ribitol dehydrogenase family signature 252 272 IPR002347 -
Ssu6g0206 293 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Ssu6g0206 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Ssu6g0206 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Ssu6g0206 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Ssu6g0206 293 CDD SDR_c1 17 292 - -
Ssu6g0206 293 Gene3D - 2 291 - -
Ssu6g0206 293 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR-RELATED 1 293 - -
Ssu6g0206 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Ssu6g0206 293 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 1 293 - -
Ssu6g0206 293 Pfam Enoyl-(Acyl carrier protein) reductase 52 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0206 Ssu-Chr6 3224715 3225927 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0206 28 291 Acyl Lipid Metabolism Gene Families AT1G24360 26.766 2.22e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0206 - - gmx:100809384 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1672 2 65773029 65779755 Ssu6g0206 6 3224715 3225927 PCT