Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3164 ATGGCGGGCGGAGCCCCGCCCCCAGCCGCGCCGAGGCCGAAGCGGCCGCGGCCGCCGTCGGGGCGCACCAACCTCGCCTCCTGCGTCGTGGCCACCGTCTTCctaatcttcatcatcatcgtcGTCCTCATTGTCTACTACACCGTCTTCAAGCCCCAGGACCCCAAGATCGCCGTCAACGCCGTCCAGCTCCCCTCGTTTTCCGTCGTAAACGGGACCGTCAACTTCACGTTCTCCCAGTACGCCTCCGTCCGGAACCCCAACCGCGCCGCGTTCTCCCACTACGACAGCTCCCTCCAGCTCCTCTACTCCGGCAGCCAGGTCGGCTTCATGTTCATCCCCGCCGGCGAGATCGACGCCGGCCGGACACAGTACATGGCCGCCACCTTCTCCGTCCAGTCCTTCCCCCTGTCGGCGCCGGCGAGGCTGGGCCCCACATTCGCCAACGGAGACGGAGTGGGCTTTAACTATGGGCTTAGGGTGGAGCCCACTTTGGAGATCGAGTCCAAGTTGGAGATGGCGGGGCGCGTGAGAGTCTTGCATTTCTTCACCCATCACGTTTATGCTAAAGCCGGTTGCAGGGTTGCCATTGCCGTAACTGATGGATCTGTGTTAGGTTTTCActgctaa 630 0.6095 MAGGAPPPAAPRPKRPRPPSGRTNLASCVVATVFLIFIIIVVLIVYYTVFKPQDPKIAVNAVQLPSFSVVNGTVNFTFSQYASVRNPNRAAFSHYDSSLQLLYSGSQVGFMFIPAGEIDAGRTQYMAATFSVQSFPLSAPARLGPTFANGDGVGFNYGLRVEPTLEIESKLEMAGRVRVLHFFTHHVYAKAGCRVAIAVTDGSVLGFHC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3164 209 SUPERFAMILY LEA14-like 36 154 - -
Ssu5g3164 209 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 16 209 - -
Ssu5g3164 209 Pfam Late embryogenesis abundant protein 83 187 IPR004864 -
Ssu5g3164 209 MobiDBLite consensus disorder prediction 1 18 - -
Ssu5g3164 209 PANTHER OS05G0238400 PROTEIN 16 209 - -
Ssu5g3164 209 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3164 Ssu-Chr5 79893496 79894125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3164 - - vra:106767456 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2957 2 91078934 91079485 Ssu5g3164 5 79893496 79894125 PCT