Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3160 ATGGAGAACCTAATCTCTTTGGTGAACAAAATCCAGAGAGCTTGCACCGCCTTAGGCGACTACGGCGAAACCAGCGCACTCCCCACACTATGGGACTCTCTTCCCGCCATCGCCGTCGTCGGAGGCCAGaGCTCTGGAAAGTCCTCCGTCTTGGAAAGCGTTGTCGGCAAAGATTTCTTACCTCGTGGATCAGGGATTGTTACGCGGCGACCGCTCGTGTTGCAGCTTCACAAGATTGATGAGGGAAGCAGAGAGTACGCGGAGTTCCTACACCTCCCGAGGAAGAGGTTCACCGATTTTGTTGCTGTGAGGAAGGAGATTCAAGACGAAACTGACAGAGAGACTGGACGAACCAAACAAATTTCGAGTGTACCGATTCATCTTAGTATATACTCTCCTAATGTTGTTAACTTGACGCTCGTTGATCTTCCTGGGCTTACGAAAGTAGCTGTAGAGGGTCAGCCGGATAGTATTGTGAAAGACATTGAGGATATGGTTCGCTCCTACATTGAGAAGCCAAACTGTATAATTTTGGCTATCTCACCAGCCAACCAAGATCTTGCAACATCTGATGCAATTAAAATTTCCCGTGAAGTGGACCCTACTGggGACAGAACCATTGGCGTTTTGACAAAGATTGATCTTATGGACAAGGGTACTGATGCTGTTGATATGTTGGAAGGAAGAGCATATAGGTTAAAGTTTCCCTGGATTGGTGTTGTGAATAGATCACAACAAGACATAAACAAGAATGTTGACATGATTGCTGCTAGGCGTAGAGAACGTGAGTACTTTAATAGTACCCCTGAATATAAACACCTTGCACACAGAATGGGTTCCGAGCATCTGGCGAAGATGCTCTCAAagCATTTGGAGACAGTAATCAAGTCCAAAATTCCTGGCATTCAATCTCTTATTAACAAAACAATCACTGAACTTGAAGCTGAACAAACTCGTTTAGGAAAGCCTGTTGCAGCTGATGCTGGGGGCAAGTTATACTCGATCATGGAAATATGCCGCTCATTTGATCAAATATTTAAAGACCATCTTGATGGCGTGCGGCCTGGAggtgataaaatttataatgtctTTGACAATCAGCTCCCTGCTGCTTTAAAAAGGTTGCAGTTTGATAAGCAGCTTTCAATGGAAAATATAAGGAAACTTATTACAGAAGCTGATGGGTATCAGCCTCATCTAATAGCTCCAGAACAAGGATACCGTCGTCTCATTGAATCTTCTCTAATAACTATTAGGGGACCTGCTGAGGCAGCTGTTGACGCGGTTCATTCCCTGTTAAAGGACTTGGTTCACAAAGCTATCAGTGAGACTGTGGACTTGAAGCAGTATCCCGGTCTCCGGGTTGAGGTTGGGGCTGCAGCTGTTGATTCACTAGAAAGAATGAGGGATGAAAGCAAAAGAGCAACACTGCAGCTAGTTGATATGGAGTGTGGCTATCTGACTGTTGATTTCTTTCGGAAGCTGCCTCAAGATGTTGATAAGGGTGGCAATCCCACACATTCAATTTTTGATAGATATAATGATTCATATCTAAGGCGAATTGGCAAGTCTTACTATTCGCAGTCTCAAACTTGTTATATTACAGCTTTGTTCTTATAG 1620 0.437 MENLISLVNKIQRACTALGDYGETSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDMLEGRAYRLKFPWIGVVNRSQQDINKNVDMIAARRREREYFNSTPEYKHLAHRMGSEHLAKMLSKHLETVIKSKIPGIQSLINKTITELEAEQTRLGKPVAADAGGKLYSIMEICRSFDQIFKDHLDGVRPGGDKIYNVFDNQLPAALKRLQFDKQLSMENIRKLITEADGYQPHLIAPEQGYRRLIESSLITIRGPAEAAVDAVHSLLKDLVHKAISETVDLKQYPGLRVEVGAAAVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGKSYYSQSQTCYITALFL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3160 539 Pfam Dynamin central region 221 488 IPR000375 -
Ssu5g3160 539 Pfam Dynamin family 37 213 IPR045063 -
Ssu5g3160 539 Gene3D - 1 309 IPR027417 -
Ssu5g3160 539 PANTHER DYNAMIN 2 527 IPR022812 -
Ssu5g3160 539 Gene3D Dynamin, middle domain 326 532 - -
Ssu5g3160 539 CDD DLP_1 33 300 IPR001401 GO:0003924|GO:0005525
Ssu5g3160 539 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 300 IPR030381 GO:0005525
Ssu5g3160 539 PANTHER DYNAMIN-LIKE PROTEIN 1E 2 527 - -
Ssu5g3160 539 SMART dynamin_3 1 251 IPR001401 GO:0003924|GO:0005525
Ssu5g3160 539 PRINTS Dynamin signature 182 200 IPR022812 -
Ssu5g3160 539 PRINTS Dynamin signature 224 243 IPR022812 -
Ssu5g3160 539 PRINTS Dynamin signature 34 52 IPR022812 -
Ssu5g3160 539 PRINTS Dynamin signature 59 76 IPR022812 -
Ssu5g3160 539 PRINTS Dynamin signature 201 217 IPR022812 -
Ssu5g3160 539 PRINTS Dynamin signature 132 149 IPR022812 -
Ssu5g3160 539 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Ssu5g3160 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 308 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3160 Ssu-Chr5 79868167 79874152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3160 - - gmx:547855 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2955 2 91004968 91007503 Ssu5g3160 5 79868167 79874152 PCT