Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3157 ATGCCAATGCTAAGAATTCTGGTTACCGGCGGAGCCGGTTATATCGGTAGCCACACCGTCCTTCAGCTTCTCCTCGGCGGTTACCACGTCCTCGCCGTCGACAACTTCGACAATTCTTCCGAAACCGCCGTCCACAGAGTCAAGAAACTCGCCGGAGAATCCGCAAAAAACCTTGACTTTCACAAGTTAGACCTGCGCGACAAAGCTGCCCTCGACAAAGTTTTTTCTGTCGTAAAGTTTGATGCCGTCATACATTTTGCTGGACTGAAGGCAGTGGGTGAAAGTGTGCAGAAACCACTACTCTACTTTGACAACAACTTGATTGGGACAATTGTTCTATTTGAAGTCATGGCTGCCCATGGATGCAAGAAGCTTGTGTTCTCGTCTTCAGCAACTGTATACGGCTGGCCAAAGGAGGTTCCATGTACTGAAGAGTTCCCTTTATCGGCAGCAAACCCATATGGACGAACCAAGCTTATCATTGAAGAAATTTGTCGTGATATCTACCGTGCAGATTCAGATTGGAAAATTATACTGTTGAGATACTTCAACCCAGTTGGTGCACATCCTAGTGGTTATATTGGTGAGGATCCTCGTGGAATTCCAAACAACCTCATGCCCTTTGTTCAGCAAGTTGCTGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAACGACTATAAAACAAGTGACGGCACTGGAGTTCGTGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCATTGAGTAAACTGGATGATCCTAAAATAGGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTAAACGCTTTTGAACGGGCCTCTGGAAAGAAAATTCCACTTGCAATGGCTGGTCGGAGACCTGGAGATGCTGAAATTGTTTATGCATCAACAGAGAAAGCGGAAAGAGAACTTAACTGGAAGGCTAAATATGGTATCGATGAGATGTGCCGCGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGATGGATCTGAAGATTCGTCCAATTGA 1053 0.453 MPMLRILVTGGAGYIGSHTVLQLLLGGYHVLAVDNFDNSSETAVHRVKKLAGESAKNLDFHKLDLRDKAALDKVFSVVKFDAVIHFAGLKAVGESVQKPLLYFDNNLIGTIVLFEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLIIEEICRDIYRADSDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYKTSDGTGVRDYIHVVDLADGHIAALSKLDDPKIGCEVYNLGTGKGTSVLEMVNAFERASGKKIPLAMAGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCRDQWNWASKNPYGYDGSEDSSN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3157 350 PRINTS Nucleotide sugar epimerase signature 301 318 - -
Ssu5g3157 350 PRINTS Nucleotide sugar epimerase signature 236 251 - -
Ssu5g3157 350 PRINTS Nucleotide sugar epimerase signature 262 277 - -
Ssu5g3157 350 PRINTS Nucleotide sugar epimerase signature 32 48 - -
Ssu5g3157 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 4 346 - -
Ssu5g3157 350 TIGRFAM galE: UDP-glucose 4-epimerase GalE 5 340 IPR005886 GO:0003978|GO:0006012
Ssu5g3157 350 Gene3D - 6 275 - -
Ssu5g3157 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 342 IPR036291 -
Ssu5g3157 350 CDD UDP_G4E_1_SDR_e 5 334 IPR005886 GO:0003978|GO:0006012
Ssu5g3157 350 Gene3D - 194 335 - -
Ssu5g3157 350 PANTHER UDP-GLUCOSE 4-EPIMERASE 4 346 - -
Ssu5g3157 350 Pfam GDP-mannose 4,6 dehydratase 7 330 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3157 Ssu-Chr5 79836491 79840068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3157 6 334 Miscellaneous Gene Families AT4G00110 28.070 7.19e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3157 K01784 - gmx:100812565 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2953 2 90995082 90999791 Ssu5g3157 5 79836491 79840068 PCT