Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2953 ATGGCATCACGCGTCAGCATTGGCAACCTTACCTCCTCCGCACCATATATCAATTCCCCTCATTTTCGGTCACCTCCTAAGATTTCCAACCCCTCTTTGCAAAACGGTTCGCACAAGGTCATGCTCGAGAAAACCATCCTCGTTACCGGCGGAGCCGGTTACATCGGCAGCCACACCGTTCTCCAGCTCTTGCTCGGAGGTTTCAGAACCGTTGTCGTCGACAACCTCGACAATTCCTCCGAGGTTGCCATCCACAGAGTCAAGGAGCTCGCCGGTGAATTTGGGAATAACCTCTCCTTTCACAAGGTGGACCTCCGGGACAGAGCTGCACTAGAACAAATTTTTGTTTCCACACAGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTAGGAGAAAGTGTGCAAAAACCGTTACTATACTACAACAACAACCTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAGAAgCTTGTGTTCTCATCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCATGTACAGAGGAGTTCCCTCTGTCAGCATTGAACCCATATGGACGAACTAAGcttatCATTGAAGAAATTTGCCGTGATGTCCACCGTGCAGAGCCAGATTGGAAAATAATACTGTTAAGATACTTCAATCCAGTTGGTGCACACCCTAGTGGTTACATTGGGGAGGATCCTCGTGGAATTCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCAGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAATGATGGCACTGGGGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCCGCATTGCTTAAACTAGATGAACCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCAGTTTTGGAGATGGTTAACGCTTTTGAGAAGGCATCCGCAAAGAAAATTCCACTTGTGATGGCTGGCCGTAGACCTGGTGACGCTGAAATAATTTATGCATCAACAAAGAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGCATTGATGAGATGTGCCGTGATCAATGGAATTGGGCTAGCAAAAACCCTTATGGCTATGGAGATCAGGACTCCACAGATTAA 1170 0.4581 MASRVSIGNLTSSAPYINSPHFRSPPKISNPSLQNGSHKVMLEKTILVTGGAGYIGSHTVLQLLLGGFRTVVVDNLDNSSEVAIHRVKELAGEFGNNLSFHKVDLRDRAALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSALNPYGRTKLIIEEICRDVHRAEPDWKIILLRYFNPVGAHPSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTNDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVNAFEKASAKKIPLVMAGRRPGDAEIIYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYGDQDSTD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2953 389 Gene3D - 234 375 - -
Ssu2g2953 389 PANTHER UDP-GLUCOSE 4-EPIMERASE 5 41 385 - -
Ssu2g2953 389 Gene3D - 46 315 - -
Ssu2g2953 389 Pfam GDP-mannose 4,6 dehydratase 47 370 IPR016040 -
Ssu2g2953 389 CDD UDP_G4E_1_SDR_e 45 374 IPR005886 GO:0003978|GO:0006012
Ssu2g2953 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 382 IPR036291 -
Ssu2g2953 389 TIGRFAM galE: UDP-glucose 4-epimerase GalE 46 380 IPR005886 GO:0003978|GO:0006012
Ssu2g2953 389 PANTHER UDP-GLUCOSE 4-EPIMERASE 41 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2953 Ssu-Chr2 90995082 90999791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2953 45 359 Miscellaneous Gene Families AT4G00110 27.976 1.97e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2953 K01784 - gmx:100818509 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2953 2 90995082 90999791 Ssu2g2953 2 90995082 90999791 ECH
Ssu2g2953 2 90995082 90999791 Ssu5g3157 5 79836491 79840068 PCT