Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3149 ATGGATGATGGTcctccaaaattaaaaatcatcccTGATCACTTTCAAGTTCCAACATCAAGTATAGAATCTCCTAGGAGCGGAACATCATCTATTACAGTGCCTGGAACTGATCAATCTCCAAGGTCCTTGCTCCATCAACGGACTCGAAGAAAATTAAGGACAGCCTTCATGTTGAATTTGTTTGCTCCACGGCGGCTGTCGTGGGGTTCCAGTACTGGAGGTCCGGAAAAGGTTGAGCTAACAGCTACAGAAGTAGAGTCACTTCGATCAGAGCTTGCTGATATAGAGGAGAGGGAAGCTCACTTGAAAGCTCAGTTGGAACATATTGATGAAGTTTTGCGGTCTGCTCGGCTATCTGGATATTTATACATTCGAACTAGATGGGCAGCACTACCAGGAGAACCTCCACCTATAGATGATACTGAAGTAGATGATTGGCTTCCTCGTTTTGTCGTTCTTCATGGagcatgtatatttttatatttgttgtgTACAGATCTAAGCCCCCAGGACTCAACCCTTCTATCTGATATTGTTGAAGTAGGGAGATTACCATGTTTTAAGCGAGAAGATGATGAAATTCAATAtgccttttatattttaactcgTCATGGATTTCGCTATGAGTGCTCAAGCAATTCCAAGATACAGGTTAGTCCAACCAAGAAGATGGCCTCACAGGTTTGCAAATCCGCTTCCAGAGCCGCGAGGTCCCTTCTCTCTGCTTCCAAGGCCTCTCGTTTTCACTCTCAAGGACGCACGGTTGGGGCTGCTGCTGCTGTTTCATTCAGCAGCAAAGTGCCTCTTTTGGCCTCAAATTATGGGAGGGGCGGTTCTGGAAGTGGATCCGCATCATCATGGATTTCAGGAGCTCTTGCTCTTCCTGCTGCAGGTTTGCTGGAGCGCACTTTCATTGCTATTAAGCCTGACGGAGTGCAGAGAGGGCTGatTTCTGAGATTATATCTCGTTTTGAGCGGAAAGGGTACAAGCTTGTGGGAATTAAAGTATTGATTCCTTCAAAGGAATTTGCCCAAAAGCACTATCACGACCTGAAAGAAAGACCCTTCTTCGATGGGCTGTGTGATTTCCTTAGCTCTGGCCCTGTTGTTGCAATgGTGTGGGAAGGACAGGGAGTTATTTCCTATGGCCGAAAGCTAATTGGAGCCACAGATCCACAGAAATCAGAACCTGGAACCATTAGGGGTGATCTGGCTGTTGTTGTTGGAAGAAATATCATCCATGGGAGCGATGGTCCAGAGACCGCCAAGGAGGAGATTAAGTTGTGGTTTAAGCCAGAGGAGTTGGTTAGTTTCACTAGCACTGCAGAGAAGTGGATTTATGGTGTCAACTGA 1356 0.441 MDDGPPKLKIIPDHFQVPTSSIESPRSGTSSITVPGTDQSPRSLLHQRTRRKLRTAFMLNLFAPRRLSWGSSTGGPEKVELTATEVESLRSELADIEEREAHLKAQLEHIDEVLRSARLSGYLYIRTRWAALPGEPPPIDDTEVDDWLPRFVVLHGACIFLYLLCTDLSPQDSTLLSDIVEVGRLPCFKREDDEIQYAFYILTRHGFRYECSSNSKIQVSPTKKMASQVCKSASRAARSLLSASKASRFHSQGRTVGAAAAVSFSSKVPLLASNYGRGGSGSGSASSWISGALALPAAGLLERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVLIPSKEFAQKHYHDLKERPFFDGLCDFLSSGPVVAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKEEIKLWFKPEELVSFTSTAEKWIYGVN 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3149 451 CDD NDPk_I 302 431 - -
Ssu5g3149 451 ProSitePatterns Nucleoside diphosphate kinases active site. 412 420 IPR023005 -
Ssu5g3149 451 Coils Coil 79 113 - -
Ssu5g3149 451 Gene3D - 300 451 IPR036850 -
Ssu5g3149 451 Pfam Nucleoside diphosphate kinase 302 435 IPR034907 -
Ssu5g3149 451 PANTHER OS05G0595500 PROTEIN 1 220 - -
Ssu5g3149 451 SMART ndk_5 301 438 IPR034907 -
Ssu5g3149 451 MobiDBLite consensus disorder prediction 1 45 - -
Ssu5g3149 451 PRINTS Nucleoside diphosphate kinase signature 412 431 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu5g3149 451 PRINTS Nucleoside diphosphate kinase signature 389 405 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu5g3149 451 PRINTS Nucleoside diphosphate kinase signature 304 326 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu5g3149 451 PRINTS Nucleoside diphosphate kinase signature 348 367 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu5g3149 451 PRINTS Nucleoside diphosphate kinase signature 368 385 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu5g3149 451 SUPERFAMILY PH domain-like 111 214 - -
Ssu5g3149 451 SUPERFAMILY Nucleoside diphosphate kinase, NDK 301 448 IPR036850 -
Ssu5g3149 451 Hamap Nucleoside diphosphate kinase [ndk]. 301 436 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Ssu5g3149 451 MobiDBLite consensus disorder prediction 17 43 - -
Ssu5g3149 451 PANTHER OS05G0595500 PROTEIN 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3149 Ssu-Chr5 79749565 79759897 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3149 - K00940 cam:101499802 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2943 2 90895213 90897764 Ssu5g3149 5 79749565 79759897 PCT