Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3148 ATGGCGGAAAAGAGGTTCATCGTTGAGGTGGAGAAAGCCAGAGAGGCCAAAGAAGGGAAGCCATCCATGGGCCCTGTCTACCGCAGCCTTTTCGCCAACGATCCACTTCCTCCTCCCATCCAAGGTCTTGATACCTGCTGGGATGTTTTCAgGATGTCAGTTGAGAAATACCCAACAAAGCCGATGCTTGGTGTCCGTGAAATCGTGAATGGGAAGGCTGGCAAGTACAAGTGGCAAACTTATAAAGAAGTGTACGACTTGGTGGTGAATGTTGGAAATTCCATCCGTGCTTGTGGTTACGGGGAGGGTGTAAAATGTGGTATTTATGGTGCCAATTGCCCAGAATGGATTATGTGCATGGAGGCCTGCAATGCTCATGGACTTTACTGTGTCCCTTTATATGATACCTTGGGTGCTGGGGCTGTGGAATTTATTATATGTCATGCAGAGGTCTCAATTGCATTTgttgaagaaaagaagataCCTGAGCTATTGAAGACATTTCCAAATGCAACAAAATATCTCAGGAcaCTGGTGAGCTTTGGAATGGTTACTCCTGAACAAAAGCAAgaagttgaaaagtttgagttgaCAATTTATTCATGGGATGAATTTTTGCAAGTGGGTCATAATCAGAGTTTTGATCTTcctgtgaaaaagaaaagtgacGTGTGTACAATAATGTATACCAGTGGAACTACCGGTGACCCCAAGGGAGTGTTGATATCCAATGAGAGCATTATTACACTCTTAACTGGGATTGAGGTATTGCTGGAGAGTTGCAATGAAAAATTGTATGACAAAGATGTATACCTATCATACCTTCCTCTTGCACATATCTTTGATAGGGTCATTGAGGAGGCAATGATAATGCATGGTGCCTCATTAGGTTTCTGGCGTGGAGATATCAAATTGTTACTGGAAGACATTGGAGAGCTAAAGCCAACCATTTTCGTTGCCGTTCCCCGTGTGCTTGATAGAGTGTACAATGGTTTGACACACAAGATTTCTACAGGGGGCTTTGTAAGACAGACAATGTTCAATTTCGCCTACTCATAcAAGTTGCATAACATGAGTAAAGGGAAAAATCATGATGCGGCATCTCCACTATTTGACAAGATTGTGTTTAGTAAGGTTAAGCAAGGTTTAGGCGGTAATGTACGTATAATTTTGTCTGGAGCAGCACCTCTATCTAAACATGTGGAAGGTTTCCTACGGGTGGTGACTTGTGCTCATATCCTACAAGGATATGgtcTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTGCCAAACCAAACGGACATGCTTGGTACGGTGGGGGCTCCTGTACCATTTGTGGATGTGTGCCTGGAATCTATTCCTGAAATGGGATATGATGCACTTGCAAGCACGCCAAGAGGAGAAATCTGTGTAAGGGGAAGTACCGTGTTTTCGGGGTACTACAAACGTGAAGACCTCACCAAAGAGGTTATGATCGATGGATGGTTCCACACAGGGGATATTGGAGAGTGGCAACCTAATGGAACCATGAAAATTATTGATCGGAGgaagaatatatttaagctttcaCAAGGAGAATATGTTGCTGTTGAAAACCTGGAGAATATTTATTTACAGGCTTCTGGTGTTGAATCTATATGGATCTATGGAAACAGTTTTGAGTCATACCTCGTTGCTATTGTTAACCCCAGCAAGCAAGCACTTGATCAGTGGGCACAAGAAAATGGTATAACCGCGGACTTCAATTCTCTCTGTGAAGATTCTAGGACAAAAAGTTACATAATTGGAGAGCTCACTAAGATTGCAAAGGAAAAGAAGTTAAAAGGTTTTGAGTTTATTAAAGCTGTTCATCTTGACCCAGTTCCATTTGACATGGAACGTGGCCTTATGACTCCAACATTTAAGAAGAAGAGACCCGAAATGCTTAAATACTACCAGAATACCGTTGACAACATGTACCAGACACTGAAGACAGAGAACAAATCCAGTGCCTGA 1998 0.4109 MAEKRFIVEVEKAREAKEGKPSMGPVYRSLFANDPLPPPIQGLDTCWDVFRMSVEKYPTKPMLGVREIVNGKAGKYKWQTYKEVYDLVVNVGNSIRACGYGEGVKCGIYGANCPEWIMCMEACNAHGLYCVPLYDTLGAGAVEFIICHAEVSIAFVEEKKIPELLKTFPNATKYLRTLVSFGMVTPEQKQEVEKFELTIYSWDEFLQVGHNQSFDLPVKKKSDVCTIMYTSGTTGDPKGVLISNESIITLLTGIEVLLESCNEKLYDKDVYLSYLPLAHIFDRVIEEAMIMHGASLGFWRGDIKLLLEDIGELKPTIFVAVPRVLDRVYNGLTHKISTGGFVRQTMFNFAYSYKLHNMSKGKNHDAASPLFDKIVFSKVKQGLGGNVRIILSGAAPLSKHVEGFLRVVTCAHILQGYGLTETCAGTFVSLPNQTDMLGTVGAPVPFVDVCLESIPEMGYDALASTPRGEICVRGSTVFSGYYKREDLTKEVMIDGWFHTGDIGEWQPNGTMKIIDRRKNIFKLSQGEYVAVENLENIYLQASGVESIWIYGNSFESYLVAIVNPSKQALDQWAQENGITADFNSLCEDSRTKSYIIGELTKIAKEKKLKGFEFIKAVHLDPVPFDMERGLMTPTFKKKRPEMLKYYQNTVDNMYQTLKTENKSSA 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3148 665 CDD LC-FACS_euk 74 654 IPR045311 GO:0004467|GO:0006631
Ssu5g3148 665 Gene3D - 42 516 IPR042099 -
Ssu5g3148 665 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 4-LIKE 5 656 - -
Ssu5g3148 665 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 656 - -
Ssu5g3148 665 Pfam AMP-binding enzyme 51 524 IPR000873 -
Ssu5g3148 665 SUPERFAMILY Acetyl-CoA synthetase-like 42 661 - -
Ssu5g3148 665 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3148 Ssu-Chr5 79736097 79744111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3148 3 663 Acyl Lipid Metabolism Gene Families AT4G23850 70.197 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3148 K01897 - gmx:100811306 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2941 2 90849246 90858668 Ssu5g3148 5 79736097 79744111 PCT