Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3132 ATGGAGGAAGAATTGGAGGTTGGTGAGGGTGTGCAACATCAAAGCAAAGATGATGGATATGCACTAAACCCTGAATTCCCCAAAACATTAAAACCCCGAGAAATACACAGTGGCTATTCCAACATTCCACCTCGAGAATATGATGGCATTGCACGAGGTAAGGGTATGGTTGAAGCCATCAGCCATGTTGCTACGCGGGAACATCTACATCCAAGCCTCTTTTTCGATGATGCTGGTGCCGTGGTTGAAGAATTAACGGTGAAAAGTTACAATGGTTCTGGCCTAGATATTGGTACATCGAACAATCTAGAGCTTTTAGCTAGAAAAGTTACTTGGTCCACATCTTTCCCAGAGATGTTAGCTAGAAAATCGCTCAATGATGATCTGGACAATGTCATGAAGCACTTGTCAACTGATGAGCATAAAGATGAACATAAAGAGGATGAAGGTGATGTTCATGAAGgaatacaaacaaaaattatatacaaatcagGATTTGCAGAGTATTTTATTAGAAACAAATTGAAGGGAAAGGGTACTGTATGTAAAGGTCCATCTTACAATGACTTATGTGTTGAGTCTAGAGATCAGAATCTGATAAAGTCTGGCATTGACACTCAGATGGATTCTAATGCATCACTGAGCTCCGGTTCAAAGACTGCAAAGTCTTCTCATAATGCTACCGTCCCAGGATCTGGTGGGTCTGGCTGTGCTGGTGTGACTTTGAGAGAATGGTTGAAATCTAGGCACCACAAAGGGAGCAAAACAGAGCATTTAcgtatatttagaaaaattctgGATTTGGTGGATGGTTCTCACTCTCGGGGAGTTGCAATGCACAATCTGTACCcttcttatattaaattgttaccaTCAAACCTGGTTATGTACCTTGGGTTGTCTACTCAGAAACAGACATTAGATAGTGTTGCAAATTCTGAAGTCCTTCACCTAGAGAATTCTTTGATTAGAAAAAGGCTGTCAGAGCAGGTAATATCTTCCTCTCTTGATTTGCAGTCGAAGAAACAGAAATGCAATGAAAATGTTAGAGTTGCTGGTGACTGGAGTCAATGCCCTCCAAGGAATGACTTGTATCTTCAAATTGCCAATGATATTAAAGTCAATGCAGTGGGATCACAAGATTATTGCAATGAATACAAGGAAGATATCcaattttctaaacaaaatatttggaGAATATCTCGCATCCCTCACATATCTAATGCAGGTCAATTGCAATTGACTTCTTTAAATGAAAGATTGGAAGATAAATGGTATACAAGTCCTGAGGGTGGTTGCACAACATCATCAAATATCTACTGTCTGGGAGTCCTTTTCTTTGAGTTACTTAATCATTTTGACTCAGAAAGAGCACATATTGCTGCAATGTTTGATCTTCGTCGTAGGATTCTTCCTTCAGTTTTCCTATCAGATTATCCTATGGAAGCCGGATTTTGCCTTTGGATGCTGCATCCTGAACCATCATCACGTCCAACAATAAGGGAGATCCTACAATCTGAAGTGATTAATGGAATGCAGGAGGTGTACTGTGAGGAATTATCAAGTCTTAACCAAGATGATGCAGAATCAGAATTGCTATTGCATTTCCTCATCTCACTAAAAGAGCAGAAGCACATGGATGCCAACAAATTGGCAGAAGAAATCAGATGCTTGGAATCAGATATAGAAGAGGTGGAGAGGAGACATGATTTTAGAAAATCCTTGCTTCCCTCAAGCTTGCAGAATGACTCCTCTTGTCAAATAGAGAGTGTGTCTCTTCTCAAAGAATCCTCAATTTCAGAAACATTACCACCAGTATCCACAATTTCTAATGCACATGAACTGAGATTGGTGAAAAATATAAGCCTGCTTGAAAGTGCTTACTTTTCCACGAGGTCCAAAATTAAGCTTCCTGGAACAGATACTGCAACTCGCCCAGATAAGAATATACTGAAAAATCATGACAACTGGTGTGTAGCTCAAAAAGACATGGAACAACATAAAACGACAGATACTTTAGGAGCTTTCTTCGACAGTTTGTGCAAGTATGCACGTTATAGCAAGTTTGAAGTGCGGGGCATACTAAGAAATGCTGATTTTAACAATCCTGCAAATGCAATCTGCTCTCTGAGTTTTGATAGGGATGAAGACTACTTTGCTGCTGCTGGgatatcaaagaaaataaaaatttttgagTTCAATGCACTTCTCAATGACTCTGTCGATATCCATTATCCTGTAGTTGAGATGTCAAACAGATCAAGGCTCAGTTGTGTTTGCTGGAATAACTACATCCAGAATTATCTTGCCTCCACAGACTATGATGGTGTAGTTAAGCTATGGGATGCTAATACATGCCAAGGGTTTTCTCGATTCACTGAACATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTCTGGTAAGCCCTACTCAATTTGCCAGTGGGAGTGATGATTGTTCTGTGAAACTGTGGAGTATCAATGAGAAAAACAGTTTAGGCACAATCAAAAATGTTGCTAATGTCTGTTGTGTTCAGTTCTCTACTCATTCCTCACATTTGCTGGCCCTTGGATCTGCGGATCACTCAACTTATTGCTATGATCTTCGCAACCTTAAAAGCCCTTGGTGTGTGTTGGCTGGCCATCGTAAAGCTGTAAGCTATGTCAAATTCTTGGACTTTGAAACACTTGTTTCTGCATCAACTGATAATACATTGAAGATCTGGGATCTTGATAAAACCTCTCCTGTGGGTCCATCAACTAGTGCTTGCAGCTTAACCCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAATTGCTGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTCTATGCCTACTATAAATCTCTTCCAATGCCAGTCACTTCGCACAAGTTTGGGTCCATCGATCCTATTTCTGGTAAAGAGACGGATGATGAGAATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACATGGTTATTGCAGCCAATTCAAGTGGAGGTATAAAAGTTCTACAGATGGTTTGA 3054 0.3906 MEEELEVGEGVQHQSKDDGYALNPEFPKTLKPREIHSGYSNIPPREYDGIARGKGMVEAISHVATREHLHPSLFFDDAGAVVEELTVKSYNGSGLDIGTSNNLELLARKVTWSTSFPEMLARKSLNDDLDNVMKHLSTDEHKDEHKEDEGDVHEGIQTKIIYKSGFAEYFIRNKLKGKGTVCKGPSYNDLCVESRDQNLIKSGIDTQMDSNASLSSGSKTAKSSHNATVPGSGGSGCAGVTLREWLKSRHHKGSKTEHLRIFRKILDLVDGSHSRGVAMHNLYPSYIKLLPSNLVMYLGLSTQKQTLDSVANSEVLHLENSLIRKRLSEQVISSSLDLQSKKQKCNENVRVAGDWSQCPPRNDLYLQIANDIKVNAVGSQDYCNEYKEDIQFSKQNIWRISRIPHISNAGQLQLTSLNERLEDKWYTSPEGGCTTSSNIYCLGVLFFELLNHFDSERAHIAAMFDLRRRILPSVFLSDYPMEAGFCLWMLHPEPSSRPTIREILQSEVINGMQEVYCEELSSLNQDDAESELLLHFLISLKEQKHMDANKLAEEIRCLESDIEEVERRHDFRKSLLPSSLQNDSSCQIESVSLLKESSISETLPPVSTISNAHELRLVKNISLLESAYFSTRSKIKLPGTDTATRPDKNILKNHDNWCVAQKDMEQHKTTDTLGAFFDSLCKYARYSKFEVRGILRNADFNNPANAICSLSFDRDEDYFAAAGISKKIKIFEFNALLNDSVDIHYPVVEMSNRSRLSCVCWNNYIQNYLASTDYDGVVKLWDANTCQGFSRFTEHEKRAWSVDFSLVSPTQFASGSDDCSVKLWSINEKNSLGTIKNVANVCCVQFSTHSSHLLALGSADHSTYCYDLRNLKSPWCVLAGHRKAVSYVKFLDFETLVSASTDNTLKIWDLDKTSPVGPSTSACSLTLSGHTNEKNFVGLSIADGYIACGSETNEVYAYYKSLPMPVTSHKFGSIDPISGKETDDENGQFVSSVCWRGKSDMVIAANSSGGIKVLQMV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3132 1017 ProSiteProfiles Trp-Asp (WD) repeats profile. 878 918 IPR001680 GO:0005515
Ssu5g3132 1017 ProSitePatterns Trp-Asp (WD) repeats signature. 769 783 IPR019775 -
Ssu5g3132 1017 SUPERFAMILY WD40 repeat-like 700 1014 IPR036322 GO:0005515
Ssu5g3132 1017 Coils Coil 548 568 - -
Ssu5g3132 1017 ProSitePatterns Trp-Asp (WD) repeats signature. 896 910 IPR019775 -
Ssu5g3132 1017 PRINTS G protein beta WD-40 repeat signature 769 783 IPR020472 -
Ssu5g3132 1017 PRINTS G protein beta WD-40 repeat signature 896 910 IPR020472 -
Ssu5g3132 1017 PRINTS G protein beta WD-40 repeat signature 812 826 IPR020472 -
Ssu5g3132 1017 MobiDBLite consensus disorder prediction 210 231 - -
Ssu5g3132 1017 PANTHER PROTEIN SPA1-RELATED 2 8 1017 IPR044630 GO:0009640
Ssu5g3132 1017 SUPERFAMILY Protein kinase-like (PK-like) 237 521 IPR011009 -
Ssu5g3132 1017 Pfam WD domain, G-beta repeat 792 825 IPR001680 GO:0005515
Ssu5g3132 1017 Pfam WD domain, G-beta repeat 877 909 IPR001680 GO:0005515
Ssu5g3132 1017 MobiDBLite consensus disorder prediction 210 233 - -
Ssu5g3132 1017 PANTHER PROTEIN SPA1-RELATED 2 8 1017 - -
Ssu5g3132 1017 SMART WD40_4 871 909 IPR001680 GO:0005515
Ssu5g3132 1017 SMART WD40_4 693 732 IPR001680 GO:0005515
Ssu5g3132 1017 SMART WD40_4 828 867 IPR001680 GO:0005515
Ssu5g3132 1017 SMART WD40_4 743 782 IPR001680 GO:0005515
Ssu5g3132 1017 SMART WD40_4 920 959 IPR001680 GO:0005515
Ssu5g3132 1017 SMART WD40_4 785 825 IPR001680 GO:0005515
Ssu5g3132 1017 MobiDBLite consensus disorder prediction 1 27 - -
Ssu5g3132 1017 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 878 911 - -
Ssu5g3132 1017 ProSiteProfiles Trp-Asp (WD) repeats profile. 792 834 IPR001680 GO:0005515
Ssu5g3132 1017 Gene3D Transferase(Phosphotransferase) domain 1 237 518 - -
Ssu5g3132 1017 Gene3D - 676 1017 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3132 Ssu-Chr5 79493773 79503316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3132 812 958 Miscellaneous Gene Families AT5G08390 30.201 2.44e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3132 K16240 - gmx:100776980 1639.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2927 2 90631413 90639693 Ssu5g3132 5 79493773 79503316 PCT