Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2927 ATGGACGAAGAATTGGTTGATGAGGCAACCCAATTGGAGGTTGCTGAGGATTCACAGCGCCAGAACAAAGAGGATGATGGGTATTCACCGAACACGGAACGCCGAAAAATCTTAAAATCCCAAGAAGTCTTTATCCCTCGGGAATATGATGGCATTCTACAAGGTAAAAACGTAGTTGAAGGTATCAACCATGCAGATACATCACAGCATCCTCGTGTAAGCCTTTTTATGGATGATGCTGATGTTATGGTTGAAGAATTAACAGTAAAAAGTTACAATGGCTCAAGCCTGGACATTGGTACATCAAACAACCGAGAGCAAATGAATAATCGGCAGAACCATTGGCAGAATCTTTATCAGCTAGCGAGTAATTCAGGAATTGGAAATTCACTAAGTGATATTGGAACCAGAAACAGTGTCCAGGCTACATCTAGTGCTCGGGAGGATATTGGATCCTCATCTTTCCCAGAGGTGTTAGCTAGAAAATCTCTCAGTGATGGCCAGAGCAATGTCTTGGAACACTTGGCAGCTGCCGAAAATAAAGAGGGTGCAGGTGATGTTCGTCAAGGAATACGGACAAAAATTATATCCCAATCAGGATTTGCTgagtttttcataaaaaatactctGAAGGGTAAGGGTATTGTATATAAAGGCCCATCTTCTGATGCCTTCTGTGTTCAGTCTAGAGAGCAAAACCGGATGAAGACTGGCATTGATGCAGATCAGAATCAGATGAGGACTGGCATTGGCACAGATCAGAATCAGATGAAGATTGGCATTGGCACAGATCAGAATCAGATGAAGATTGGCATTGGCACAGATCAGAATCGGATGAAGAATGGCATTGGTACTGATCATAAACAGATGAAGACTGGTGTTGGTACTCACTTGAACTCTAATCAACCAGTGGGCTGTGGTTCCAAAACTGCAAAGTTTCCTTCTTATTGTGGTGCTATGCCTAGATCTGGCAGGTCTGAAAGTGACGGTTTGACTTTGAGAGAATGGTTGAAACATGGGCACCACAAAGCAAGCAAAGTGGAAAGTTTGAGTATATTTAGGAAGATTGTGGATTTGGTGGACAACTCTCACTCTCAGGGAGTTGCATTGCATAACCTGCGTCcatcttatattaaattgacACCATCAAACCAGGTCATGTACCTTGGTTTACCTGTCCAAAAACAGATGGTGGATAGTGTTGTAAATTCTGAAGTTGTTCACTTAgataattcttttattagaaaaagGCTGTCAGAGCAAGTACCATTTCCCTCTCTTGATATGGGgtcaaagaaacaaaaatttaatgagAATTTGAGAGCTACTGGTGGTGAGTTGTGTCTTGAAACTGCAAGTGATAGGAAACTTCACGGTCATACAGTTGGATCACAAGGTTATTACAATGAATATGAGGAAGATACCCAATTTGCTAAATATAACATTGGAAGAATGTCTAGCATCCCTCATGTATCTAATCCAGGTCAAATGCCATTGACTTCATgtgaaaaattggaaaataaatgGTATGCGAGTCCTGAGGGTGGTTACACAACATCATCAAATATCTACTGCCTTGGTGTCCTCCTTTTCGAGTTACTTGGCCATTTTGACTCTGAAAGAGCACATATTGCAGCAATGTCTGATCTTCGCCATAGGATTCTTCCTCCAGTTTTCCTATCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCTGAACCATCATCACGTCCAACAACAAGGGAAATCCTTCAATCTGAATTGATTAATGGATTGCAAGAGTTGTGTAGTGAGGAATTGTCATCAAGTATTGACCAAGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTCGTCTTGTTAAAAGAGCAGAAGCAGAACAATGCCTTCAAACTGGTAGAAGAAATCAAGTGCTTGGAATCAGATATAGAAGAGGTGGAGAGGAGGCATGACTCAAGAAAATCTTTGGTTTCCTCTGGCTTGCAGAATGATTACTCTTGTCAGAAAGAGATTATGCCTCTTAAAAAGGAACCTTTGAGTTTAGAAATGCTGCCCTCAATATCCCCAATCTGTGATTCAAATGAGGCGAGATTGATGAGAAATATATGCCATCTTGAAAGTGCTTATTTTTCCGTGAGATCCAAACTTAAGATTTCTGAAACAGATGCTATAACTCACCCAGACAAAGATATACTCAGAAATCGTGAGAACTGGTATGTTGCCAAAAAAGGCGAGGAACAAACTAAAAGGAAAGATACTTTGGGGATATTCTTTGATGGTTTGTGCAAATATGCACGTTATTGCAAGTTTGAAGTGCGGGGTGTACTAAGAAATGCTGATTTTAACAATCCTGCAAATGTAATTTGCTCTCTAAGCTTTGATCGGGATGAAGATTACTTTGCTTCTGCTGGGATatctaagaaaataaaaatttttgagTTTAGTGCACTTTGCAATGATTCTGTTGATATCCATTATCCTGCGGTTGAGATGTCAAACAGATCAAAACTCAGCTGTGTTTGCTGGAATAACTATATTAAGAACTATCTTGCTTCTACAGACTATGATGGTATAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAATTCACTGAACATGAGAAGAGGGCTTGGTCTGTTGACTTCTCTGTAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGagGAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCAATTCTCTGCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCGGACTACTCAACATATTGTTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTGTATTGGCTGGCCATCGTAAAGCTGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCTTCTACTGATAATACATTGAAGATATGGGATCTCAATAAAACCTCTCCTGTTGGTGCATCCATTAATGCTTGCAGCCTAACCCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTCTCTCAGTGGCTGATGGATATATTGCATGTGGTTCAGAAACTAATGAGGTTTACACCTACTATAGATCGCTTCCCATGCCAATCACTTCACACAAATTTGGGTCCATTGATCCAATTTCTGGCAAAGACACTGATGATGACAATGGTCAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACACTCTTATTGTGGCCAATTCAAGTGGATGTGTAAAAGTGCTACAGATGGTTTAA 3309 0.3956 MDEELVDEATQLEVAEDSQRQNKEDDGYSPNTERRKILKSQEVFIPREYDGILQGKNVVEGINHADTSQHPRVSLFMDDADVMVEELTVKSYNGSSLDIGTSNNREQMNNRQNHWQNLYQLASNSGIGNSLSDIGTRNSVQATSSAREDIGSSSFPEVLARKSLSDGQSNVLEHLAAAENKEGAGDVRQGIRTKIISQSGFAEFFIKNTLKGKGIVYKGPSSDAFCVQSREQNRMKTGIDADQNQMRTGIGTDQNQMKIGIGTDQNQMKIGIGTDQNRMKNGIGTDHKQMKTGVGTHLNSNQPVGCGSKTAKFPSYCGAMPRSGRSESDGLTLREWLKHGHHKASKVESLSIFRKIVDLVDNSHSQGVALHNLRPSYIKLTPSNQVMYLGLPVQKQMVDSVVNSEVVHLDNSFIRKRLSEQVPFPSLDMGSKKQKFNENLRATGGELCLETASDRKLHGHTVGSQGYYNEYEEDTQFAKYNIGRMSSIPHVSNPGQMPLTSCEKLENKWYASPEGGYTTSSNIYCLGVLLFELLGHFDSERAHIAAMSDLRHRILPPVFLSENPKEAGFCLWLLHPEPSSRPTTREILQSELINGLQELCSEELSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLVEEIKCLESDIEEVERRHDSRKSLVSSGLQNDYSCQKEIMPLKKEPLSLEMLPSISPICDSNEARLMRNICHLESAYFSVRSKLKISETDAITHPDKDILRNRENWYVAKKGEEQTKRKDTLGIFFDGLCKYARYCKFEVRGVLRNADFNNPANVICSLSFDRDEDYFASAGISKKIKIFEFSALCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSVVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASINACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYTYYRSLPMPITSHKFGSIDPISGKDTDDDNGQFVSSVCWRGKSDTLIVANSSGCVKVLQMV 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2927 1102 ProSitePatterns Trp-Asp (WD) repeats signature. 981 995 IPR019775 -
Ssu2g2927 1102 Gene3D Transferase(Phosphotransferase) domain 1 329 602 - -
Ssu2g2927 1102 SUPERFAMILY WD40 repeat-like 786 1099 IPR036322 GO:0005515
Ssu2g2927 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 877 919 IPR001680 GO:0005515
Ssu2g2927 1102 PANTHER PROTEIN SPA1-RELATED 2 1 1102 IPR044630 GO:0009640
Ssu2g2927 1102 MobiDBLite consensus disorder prediction 1 33 - -
Ssu2g2927 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 834 876 IPR001680 GO:0005515
Ssu2g2927 1102 Gene3D - 762 1102 IPR015943 GO:0005515
Ssu2g2927 1102 ProSitePatterns Trp-Asp (WD) repeats signature. 854 868 IPR019775 -
Ssu2g2927 1102 PRINTS G protein beta WD-40 repeat signature 981 995 IPR020472 -
Ssu2g2927 1102 PRINTS G protein beta WD-40 repeat signature 897 911 IPR020472 -
Ssu2g2927 1102 PRINTS G protein beta WD-40 repeat signature 854 868 IPR020472 -
Ssu2g2927 1102 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 963 996 - -
Ssu2g2927 1102 MobiDBLite consensus disorder prediction 13 33 - -
Ssu2g2927 1102 SMART WD40_4 870 910 IPR001680 GO:0005515
Ssu2g2927 1102 SMART WD40_4 1061 1100 IPR001680 GO:0005515
Ssu2g2927 1102 SMART WD40_4 913 952 IPR001680 GO:0005515
Ssu2g2927 1102 SMART WD40_4 827 867 IPR001680 GO:0005515
Ssu2g2927 1102 SMART WD40_4 773 817 IPR001680 GO:0005515
Ssu2g2927 1102 SMART WD40_4 956 994 IPR001680 GO:0005515
Ssu2g2927 1102 SMART WD40_4 1005 1044 IPR001680 GO:0005515
Ssu2g2927 1102 ProSiteProfiles Trp-Asp (WD) repeats profile. 963 1003 IPR001680 GO:0005515
Ssu2g2927 1102 PANTHER PROTEIN SPA1-RELATED 2 1 1102 - -
Ssu2g2927 1102 Coils Coil 626 653 - -
Ssu2g2927 1102 Pfam WD domain, G-beta repeat 872 910 IPR001680 GO:0005515
Ssu2g2927 1102 Pfam WD domain, G-beta repeat 962 994 IPR001680 GO:0005515
Ssu2g2927 1102 SUPERFAMILY Protein kinase-like (PK-like) 330 600 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2927 Ssu-Chr2 90631413 90639693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2927 897 1043 Miscellaneous Gene Families AT5G08390 29.530 1.99e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2927 K16240 - gmx:100778303 1976.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2927 2 90631413 90639693 Ssu2g2927 2 90631413 90639693 ECH
Ssu2g2927 2 90631413 90639693 Ssu5g3132 5 79493773 79503316 PCT