LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g3097	ATGGCTCAATTGTTGTCCAAGATGGCCACCGGGGATGGACATGGTGAAGCATCCCCATACTTTGATGGATGGAAGGCATATGATGAAAACCCCTTTCATCCTACCGAGAATCCTAACGGGGTTATCCAAATGGGTCTTGCGGAGAATCAGCTTTCTTCTGATTTGGTTGAAGATTGGATACTGAGTAACCCAGAGGCCTCTATTTGCACTCCAGAAGGAATAAATGATTTCAGGGCCGTAGCTAATTTTCAGGATTATCATGGTCTACCCAAGTTCTGCAAAGCTGTGGCTAAATTCATGTCTAGAACAAGAGGAAACAGAGTCACGTTTGACCCTGATCGTATTGTCATGAGCGGTGGAGCAACTGGAGCACACGAGGTCGCTACCTTTTGTTTGGCAGACCCCGGTGACGCATTTTTGGTGCCCATTCCCTATTATCCAGCTTTTGACCGGGATTTGAGGTGGAGAACAGGAGTTCAACTTGTTCCAGTTATGTGCTATAGCTCTAATGATTTCAAGTTAACAAGGCAAGCATTGGAAGATGCCTTTGACAAAGCCAAAGAGGATAACATCAGAGTAAAGGGCTTGCTCATCACCAACCCATCAAACCCATTGGGCACAGTCATGGACAGAAAGACATTAAGAACCGTGGTGAGCTTCATCAATGAGAAGCGTATCCACCTTGTGTGTGATGAAATATATGCTGCAACAGTTTTTAGCCACCCCGGTTTCATAAGCATAGCTGAGATATTAGAGGAGGACACAGATATTGAATGTGACCGCAACCTCGTTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTTAGAGTTGGCGTCATATACTCTTACAATGATGCTGTGGTCCATTGTGCACGCAAAATGTCCAGCTTTGGATTAGTGTCAACACAGACGCAGCATCTTTTAGCATCAATGCTAAATGATGATGAGTTTGTGGAAAGGTTTCTGGCAGAGAGTGCAAAGAGGTTGGCACAAAGGTTCAAGGTTTTCACTGGGGGGTTGGCCAAAGTTGACATAAAGTGCTTGCAAAGCACTGCTGGTCTCTTTGTGTGGATGGATTTAAGGCATCTTCTCAAGAAGGCAACGCTTGACTCTGAAATGGAGCTTTGGAAAGTGATCATTCATGAAGTTAAGATCAATGTTTCACCGGGCTCTTCTTTTCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGACATGGCTGTGCAAATTGCTTTGCAAAGAATTCGCACCTTTGTGCTTCAAAACAAGGAGGTCATGGTGCCTAGCAAGAAACATTGTTGGCACAGTAACTTGAGGCTAAGCCTCAAAACCAGAAGGTTTGATGATATCATGATGTCACCTCACTCCCCCATACCTCAGTCACCTCTAGTTAAAGCCACAATTTGA	1434	0.4477	MAQLLSKMATGDGHGEASPYFDGWKAYDENPFHPTENPNGVIQMGLAENQLSSDLVEDWILSNPEASICTPEGINDFRAVANFQDYHGLPKFCKAVAKFMSRTRGNRVTFDPDRIVMSGGATGAHEVATFCLADPGDAFLVPIPYYPAFDRDLRWRTGVQLVPVMCYSSNDFKLTRQALEDAFDKAKEDNIRVKGLLITNPSNPLGTVMDRKTLRTVVSFINEKRIHLVCDEIYAATVFSHPGFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGVIYSYNDAVVHCARKMSSFGLVSTQTQHLLASMLNDDEFVERFLAESAKRLAQRFKVFTGGLAKVDIKCLQSTAGLFVWMDLRHLLKKATLDSEMELWKVIIHEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQIALQRIRTFVLQNKEVMVPSKKHCWHSNLRLSLKTRRFDDIMMSPHSPIPQSPLVKATI	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g3097	477	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	3	439	-	-
	Ssu5g3097	477	SUPERFAMILY	PLP-dependent transferases	14	428	IPR015424	-
	Ssu5g3097	477	PANTHER	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6	3	439	-	-
	Ssu5g3097	477	Pfam	Aminotransferase class I and II	42	424	IPR004839	GO:0009058\|GO:0030170
	Ssu5g3097	477	CDD	AAT_like	82	425	-	-
	Ssu5g3097	477	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	269	282	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	190	214	-	-
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	295	318	-	-
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	226	249	-	-
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	114	134	-	-
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	44	70	-	-
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	77	93	-	-
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	263	287	-	-
	Ssu5g3097	477	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	136	157	-	-
	Ssu5g3097	477	Gene3D	Aspartate Aminotransferase, domain 1	30	423	IPR015422	GO:0003824
	Ssu5g3097	477	Gene3D	-	64	318	IPR015421	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g3097	Ssu-Chr5	78759282	78761586	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g3097	K20772		-	gmx:100037458	904.049

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2889	2	90130300	90133217	Ssu5g3097	5	78759282	78761586	PCT