Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2889 ATGGAGCTGATGGGCGTGAACCAACCCCAATTACTGTCTAAGATTGCGACCGGCAATGGACATGGTGAGAACTCCCCATACTTTGATGGTTGGAAGGCTTATGAAGATGATCCCTTTCACCCCACCAAGAATCCTAATGGGGTTATCCAAATGGGCCTGGCAGAAAATCagCTTACTTCTGACTTGGTTCAACATTGGTTAACGACTAATCCCGGGGCTTCCATTTGCACTCCAGAGGGGGTGCGTGATTTCAAGGCCATAGCTAACTTTCAGGATTATCATGGTCTGCCGGAGTTCAGAAAAGCTGTGGCTAAATTCATGGCAAGAACGAGAGGAAATAGAGTCACGTTCGACCCTGACCGTATTGTTATGAGCGGTGGAGCAACGGGAGCACACGAGGTCACTGCCTTTTGTTTGGCAGACCCCGGTGATGCATTTTTGGTCCCCACACCTTATTATGCAGGTTTCGACAGGGATTTGAGGTGGAGAACGGGAATTCAACTTGTTCCAGTTATCTGCGAAAGCTCTAACGATTTCAAGTTGACAAGGAAAGCGTTGCAAGATGCGTATAAGGAAGCCAAAAAGGACAACATCAGAATAAAGGGCTTGCTAATTACCAATCCGTCAAACCCACTGGGAACAGTCATGGACCGAGAAACTCTAAGAACAGTGGTGagttttattaatgaaaaacataTCCACCTAGTAAGCGACGAAATATATGCCGGTACAGTTTTTTGCCACCCTGGTTTCACGAGCATCTCGGAGATAATAGAGGAAGAGACAGACATAGAATGTGACCGTGACCTCATCCACATTGTTTATAGTCTTTCCAAGGACATGGGGTTCCCTGGCTTTAGAGTTGGCATCATATACTCTTACAATGATGCCGTTGTTAATTGTGCTCGCAAAATGTCTAGCTTTGGATTAGTGTCCACACAGACCCAACATCTCATAGCATCAATGCTTTCTGATGATGAGTTTGTGGGACGGTTCCTTGAAGAGAGTGCAAAACGGCTTGCCAAAAGGTATGGGGTTTTCTGTAGGGGTCTGGCTCAAGTTGGCATAAAGTGCTTGGCGAGCAATGCTGGGCTCTTTCTGTGGATGGATTTGCGTCGTCTTTTGAAGAAGCCAACATTTGACGCGGAAATGGAACTCTGGAGAGTGATCATTCACCAAGTTAAGATCAATATTTCCCCTGGCTCTTCTTTTCATTGCTCTGAGCCAGGGTGGTTCAGGGTGTGCTATGCAAACATGGATGATAGAGCCGTGGAAGTTTCTCTGGCAAGAATGCGCACCTTCGTGAGTCAGAACACCGAAGCCAAGAAACCTTGTAGCCAGAGAAAATTAAGGCTAAGCTTCTCATCGAGAAGGTTGGATGAGTTTTTGTTGTCACCTCACTCCCCTTTTCCTCAATCACCTCTAGTTAAAGCCACGACTTGA 1443 0.4588 MELMGVNQPQLLSKIATGNGHGENSPYFDGWKAYEDDPFHPTKNPNGVIQMGLAENQLTSDLVQHWLTTNPGASICTPEGVRDFKAIANFQDYHGLPEFRKAVAKFMARTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYAGFDRDLRWRTGIQLVPVICESSNDFKLTRKALQDAYKEAKKDNIRIKGLLITNPSNPLGTVMDRETLRTVVSFINEKHIHLVSDEIYAGTVFCHPGFTSISEIIEEETDIECDRDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQHLIASMLSDDEFVGRFLEESAKRLAKRYGVFCRGLAQVGIKCLASNAGLFLWMDLRRLLKKPTFDAEMELWRVIIHQVKINISPGSSFHCSEPGWFRVCYANMDDRAVEVSLARMRTFVSQNTEAKKPCSQRKLRLSFSSRRLDEFLLSPHSPFPQSPLVKATT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2889 480 CDD AAT_like 89 432 - -
Ssu2g2889 480 Pfam Aminotransferase class I and II 49 427 IPR004839 GO:0009058|GO:0030170
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 51 77 - -
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Ssu2g2889 480 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Ssu2g2889 480 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Ssu2g2889 480 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 5 445 - -
Ssu2g2889 480 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 5 445 - -
Ssu2g2889 480 Gene3D Aspartate Aminotransferase, domain 1 37 430 IPR015422 GO:0003824
Ssu2g2889 480 SUPERFAMILY PLP-dependent transferases 21 436 IPR015424 -
Ssu2g2889 480 Gene3D - 71 325 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2889 Ssu-Chr2 90130300 90133217 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2889 K20772 - gmx:100793020 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2889 2 90130300 90133217 Ssu2g2889 2 90130300 90133217 ECH
Ssu2g2889 2 90130300 90133217 Ssu5g3097 5 78759282 78761586 PCT