Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3086 ATGGGTGAGAAAGAGTCAGAGAAGCTAATTTGGGAACAGATGAGAACCCCTCCAGCTGGCACTCCCATTGCAGCAACTGCCTCACAGCACCGAACCTTACCGAAGCTTCTTGTCCTTCTCATCCTCTTCGTCTCCGTCACCTACGTCGTCTACACGCTCAAGCTCGTCTCAACCTCACGCGCCTGCCACAACGACGCTCCGTTCTCCACCGAAACCTTCTCCAGAACCATTCCCGCCGTCAATGCCACCGCCTCCGCGCTCAGACATGCCTCCTCCGCCAGTCTCCGGCGAGGCTCCCGCGAGACGAACCCCGAGGATCGGACGGAGCTCCGGCACGTGGTGTTCGGAATCGCGGCGTCGGCGAAGCTCTGGGAGCAGAGGAAGCGCTACATCAAGCTCTGGTACAGGGCGAGGGAGATGCGCGGCGTGGTGTGGCTCGACGAGAAGGTGAAGCCGAAGGAGGAGAACGACGACGACGACGGCGCGCTCCCGCCGGTGAGAATCTCCGGCGACACCGCGAGGTTCAAATACGTGAACAAACAGGGGCACCGGTCGGCGATCAGGATCTCGCGGATCGTGTCGGAGACGCTGCGGCTCGGGATGAAGGACGTGCGGTGGTTCGTGATGGGCGACGACGACACCGTTTTCGTCACGGAGAACCTAATCCGCGTCCTGAGAAAATACGACCACAATCAGTTCTATTACATTGGAAGCTTATCAGAGTCTCACTTGCAGAACATCTACTTCTCTTATAACATGGCTTATGGCGGAGGAGGTTTTGCAATCAGTTATCCTCTGGCGAAGGCTTTGTACAAAATGCAGGACCGTTGCATTCAGCGTTACCCGGGTCTCTATGGCTCCGATGATAGAATTCAAGCTTGTATGGCCGAACTCGGTGTTCCACTCACCAAGGAAATCGGTTTCCACCAGTATGATGTGTATGGAAACCTGTTCGGTCTTCTTGCATCTCATCCCGTGACTCCATTGGTGTCACTGCACCATCTTGATGTGGTCGAGCCAATCTTCCCCAACGTGACTCAAGTAGAAGCCCTTCAGAGGCTCACTATACCAATGAAGCTTGACTCAGCAGGGCTCATGCAGCAATCCATCTGCTACTACAAATCAAACAGCTGGACTGTTTCTGTTTCGTGGGGTTTTGCTGTTCAGATATTTCGCGGCGTGTTTTCACCACGTGAGATGGAAATGCCTTCAAGAACATTCTTGAATTGGTATAGAAGAGCAGATTACACTGCATATGCATTCAACACGCGTCCAGTTAGCCGAAATCCATGCCAGAAGCCTTTTGTATTTTACTTCTCAAAGGCAAAATACAACTCTACAATGCAACAAATAGTGAGTGAATATGAAAGGCATCGTGTCCCTCACCCAGAATGCAGGTGGAAGATGGCTGATCCTGCTGCTCTTGACAAAGTGGAGGTATATAAGAAGCCAGATCCGCATCTATGGGATAGAGTAAGTTCTTCTCAGAGTCTTAAGTTAAATACTATACTACCAAGTACCAACACGTGA 1530 0.5216 MGEKESEKLIWEQMRTPPAGTPIAATASQHRTLPKLLVLLILFVSVTYVVYTLKLVSTSRACHNDAPFSTETFSRTIPAVNATASALRHASSASLRRGSRETNPEDRTELRHVVFGIAASAKLWEQRKRYIKLWYRAREMRGVVWLDEKVKPKEENDDDDGALPPVRISGDTARFKYVNKQGHRSAIRISRIVSETLRLGMKDVRWFVMGDDDTVFVTENLIRVLRKYDHNQFYYIGSLSESHLQNIYFSYNMAYGGGGFAISYPLAKALYKMQDRCIQRYPGLYGSDDRIQACMAELGVPLTKEIGFHQYDVYGNLFGLLASHPVTPLVSLHHLDVVEPIFPNVTQVEALQRLTIPMKLDSAGLMQQSICYYKSNSWTVSVSWGFAVQIFRGVFSPREMEMPSRTFLNWYRRADYTAYAFNTRPVSRNPCQKPFVFYFSKAKYNSTMQQIVSEYERHRVPHPECRWKMADPAALDKVEVYKKPDPHLWDRVSSSQSLKLNTILPSTNT 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3086 509 PANTHER FRINGE-RELATED 24 493 - -
Ssu5g3086 509 Gene3D - 100 363 - -
Ssu5g3086 509 Pfam Protein of unknown function, DUF604 245 493 IPR006740 -
Ssu5g3086 509 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 24 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3086 Ssu-Chr5 78560810 78563830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3086 3 491 Glycosyltransferase AT4G23490 68.560 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3086 - - gmx:100818244 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2883 2 90049876 90053872 Ssu5g3086 5 78560810 78563830 PCT