Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3083 ATGGCAGCGACAACTGCAACAACTTTCCTCAAACTTCAAAACCAGCCCACAAAGCCCAAACGACGCAAGTATCGGGAAACTACCATCTCCGCTTCCGCCTCTCCAAACGAGACAAACAGCACGCCACAGCGCCGCACTCCCGATTCCCCTTTATGCCCCGAAGCCGAAGTCGAACCCGAACCAGCATTGCCCGAATCCCCCTCCACCTACAGGATCCGCTTCTCCCCGGGGCGGTTCTCCCCGATAATGGACTTCACCCACTCTTCCCCCACCGCGAACGGGCACCATTCGGGCCAGGCCCAGGACTCGTTCCCCTCGAGCTTCTCCAAGTTCAACTCCGCCCTCACCGCGGGCCTCCTCAACCCAATGTCCCCCCCGCCCGACAAGACCCGATCGAGCCCAACCCTCTTCGAAATGATGGCCAGCGAGCCCGACGTCCACCACAGGCCCACCCAGATCCCGCCCAACaacgccgccgccgccgccgcctcGTCCGTGCACAAGCCCCAGATTCTGGATCGCCAGGCCCTCACGATGCAGCGGATTTCGGAGCTGTTGGGCTCTCGCAGCCCCGGGAACCAGTTCAACGACGCCGTTTCGAGTGACATCAAACTCACTCTTAGTTCCAAGGACGGAATTAGCGTCTCCATGAACGTGCATCGCCAAATCCTCGTTGCTCACAGCAGGTTCTTCGCGGTGAAGCTCTCCGATCGGTGGACGAAGCAGCAGCAGCAGCGCTCGCCGGTGCCCTACGAAGTTGAAATCGCCGATTGCGATGACGTGGAGGTTTACATCGAGACGTTGAGGTTGATGTATTGTAAGGATCTTAGGAAGAAGCTCATGAGGGAGGATGTCTCCAGAGTTTTAGGTATCTTAAAGGTTTCAGCTGCCATTGGGTTTGATGCTGGGGTTTTGTCTTGTTTGGAGTACCTGGAGGCGGCGCCGTGGGCGGAGGATGAGGAGGAGAAGGTGGCATCTCTGCTGTCTGAGCTTCGTCTCGAGGCAGTTGGAGCTGGGGAGGTTTTGAAGAGGGTTTCAACTGATGTTGTTGCCAATGGGAATGAAGAGGGGAGTGACAACGAGGAGGTTCTTCTTAAGCTAATTCGTGTGGTTCTTGAAGGCAAGGATGAGAAGGCCAGGCGTGAGATGAAAGGGTTAGTGTCGAAGATGCTGCGTGAGAATTCTTCTCAGAATGATCTTCGGAAGGAGTCGTTGTACTTGGCGTGTGATGATTGTCTGCAGTTACTTCGTCGCCACTTTTTGCAGGCTGCGGCTTCTGACCTGCAGGATGTGAGTCAAATTGCGCGACAAGCGGATAATTTGCATTGGATTTTGGATATTTTAGTTGACAGACAGATTGCCGAGGATTTCCTGAAGACATGGGCGTCTCAATCGGATTTAGCTGAAGCTCATTCTAAAGTGCCAGCAGTTCACAGGTTTGAGGTTAGCAGAGTTACGGCAAGGTTGTTTGTTGGGATTGGGAAAGGACAGTTGTTGGCTTCTAAAGATGTCAGGTGTTTGCTTCTAAAGACATGGCTGGTGCCCTTTTATGATGACTTTGGTTGGATGAGAAGGGCATCCAAGGGGCTTGATAGGCACCTAATTGAGGATGGTCTTAGTAACACGATTCTCACTCTGCCACTCTCCTGTCAACAGGAAATTTTGCTTGCTTGGTTTAATCGCTTCTTGAATTCTGGTGAAGATTGCCCAAATATTCAAAGAGGGTTTGAAGTTTGGTGGAGAAGGGCTTTCTGGAAGAGGAATGGAGAGCAAGAACGAACAAGACAATTACGAATTACAACTACATCAGTTGAGAACCCTTGA 1824 0.5175 MAATTATTFLKLQNQPTKPKRRKYRETTISASASPNETNSTPQRRTPDSPLCPEAEVEPEPALPESPSTYRIRFSPGRFSPIMDFTHSSPTANGHHSGQAQDSFPSSFSKFNSALTAGLLNPMSPPPDKTRSSPTLFEMMASEPDVHHRPTQIPPNNAAAAAASSVHKPQILDRQALTMQRISELLGSRSPGNQFNDAVSSDIKLTLSSKDGISVSMNVHRQILVAHSRFFAVKLSDRWTKQQQQRSPVPYEVEIADCDDVEVYIETLRLMYCKDLRKKLMREDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWAEDEEEKVASLLSELRLEAVGAGEVLKRVSTDVVANGNEEGSDNEEVLLKLIRVVLEGKDEKARREMKGLVSKMLRENSSQNDLRKESLYLACDDCLQLLRRHFLQAAASDLQDVSQIARQADNLHWILDILVDRQIAEDFLKTWASQSDLAEAHSKVPAVHRFEVSRVTARLFVGIGKGQLLASKDVRCLLLKTWLVPFYDDFGWMRRASKGLDRHLIEDGLSNTILTLPLSCQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGEQERTRQLRITTTSVENP 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3083 607 MobiDBLite consensus disorder prediction 1 72 - -
Ssu5g3083 607 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g3083 607 ProSiteProfiles BTB domain profile. 201 280 IPR000210 GO:0005515
Ssu5g3083 607 Gene3D Potassium Channel Kv1.1; Chain A 179 314 IPR011333 -
Ssu5g3083 607 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 16 605 IPR038920 -
Ssu5g3083 607 MobiDBLite consensus disorder prediction 28 47 - -
Ssu5g3083 607 PANTHER OSJNBA0011J08.25 PROTEIN 16 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3083 Ssu-Chr5 78508473 78510631 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3083 - - ccaj:109800730 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3083 5 78508473 78510631 Ssu1g2565 1 70250710 70251072 PCT