Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3072 ATGAGAGGAACTAATGGGAATGATGGGAGAGCTGTTAACAACACTTTGGACACTATAAACGCTGCTGCTTTTGCCATAGCCTCAGCCCAGAACCGCCTTTCTCAACCTGCTACCCAGAAGAAAAGATGGGGAAGCTGGTTGAGCAAAATTGGGTGTTTTGGATATCAAAAAAACCGAAAGCGCATTGGGCATGCTGTCCTTGTTCCGGAAACAACCCCCAATGGAGCAGATCCTGCTGCAGCTGTTGGTTCAACCCAAGCACCTATCATAACACTTCCCTTCGTCGCACCTCCCTCATCTCCTGCATCTTTCTTTCAATCAGAACCTCCCTCAACTGCGCAGTCACCAATTGGTAAACTATCTCACACTTGTGTGTCTGCCAGTATGTACTCTCCTGGTGGCCCTGCCTCAATCTTTGCCATTGGCCCTTATGCCCATGAAACCCAATTAGTCTCACCACCTGTTTTCTCAGCTTCGTCTACTGCTCCCTTCACTCCACCTCCTGAATCCGTCCACTTGACTACGCCTTCTTCACCTGAGGTTCCATTTGCTCAGCTACTTGACTCCAACAATAGGAATTGTGAGACCTTTCAGAGGTTCCAAATATCTCACTATGACTTCCAATCCTATCAGTTTCATCCTGGAAGCCCGGTTGGTCAACTCATATCACCAAGATCCGCCATCTCAGCTTCCGGCACCTCATCCCCACTCCCTGACTCTGAATTTAATGCTACTTTATCCCATATCCTTGATTGCCAAAGAGCAGACCCTCCCAAGCTTCTCAACTTAGATAAATTGTCTGCTTATGAAAACTGGAAGTCAAATCATGGTTCCGGGTCTCTGACCCCGGATGCTGCAAAGTCTGCAACTCAAGCCGGCTTTGTTTCAAATCATTGGGTTTCTGAGATCAAAATGTCCCCACATCGAAGCAAAAATCGCCGCAGCGAGATTAGTATAAATCACAGAGTTTCCTTTGAATTATCTGCCCCAAAAGTTTTGAAATCTCTGGAAAACAAGCCAGCAGCATCAGCATGGACTAAGGTGCTGTCAAAACTGAAAAATGATGCAACAACAGCagacaaagaagaaaattcaGGAGAAACCGGGCGCGATGACAAACAAGCCGTTGCTGAAACTCCCAATGCTCCACCACTGGAAGCCACTTTGGGTGGAGATGAGGCAACAGTTCATGAGAAGGATCAGTCCTTGACTCTTTCTTCTACTAAAgaattcaattttgataatgCAGACGGCGGAGATTCTCTTGCTCGCAATATAGTTGCTGATTGGTGGGCTAATGAGAAAGTTGCAGGGAAGGAGGGAGGGGCCTCCAAGGACTGGTCCTTTTTCCCAATGATTCAACCTGGTGTCAGCTAA 1377 0.4619 MRGTNGNDGRAVNNTLDTINAAAFAIASAQNRLSQPATQKKRWGSWLSKIGCFGYQKNRKRIGHAVLVPETTPNGADPAAAVGSTQAPIITLPFVAPPSSPASFFQSEPPSTAQSPIGKLSHTCVSASMYSPGGPASIFAIGPYAHETQLVSPPVFSASSTAPFTPPPESVHLTTPSSPEVPFAQLLDSNNRNCETFQRFQISHYDFQSYQFHPGSPVGQLISPRSAISASGTSSPLPDSEFNATLSHILDCQRADPPKLLNLDKLSAYENWKSNHGSGSLTPDAAKSATQAGFVSNHWVSEIKMSPHRSKNRRSEISINHRVSFELSAPKVLKSLENKPAASAWTKVLSKLKNDATTADKEENSGETGRDDKQAVAETPNAPPLEATLGGDEATVHEKDQSLTLSSTKEFNFDNADGGDSLARNIVADWWANEKVAGKEGGASKDWSFFPMIQPGVS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3072 458 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 458 - -
Ssu5g3072 458 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 458 IPR040420 -
Ssu5g3072 458 MobiDBLite consensus disorder prediction 356 374 - -
Ssu5g3072 458 MobiDBLite consensus disorder prediction 356 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3072 Ssu-Chr5 78282733 78285102 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3072 - - gmx:100791666 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2873 2 89906952 89909282 Ssu5g3072 5 78282733 78285102 PCT