Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3058 ATGGGAAATCGACGCTTCACTCAGGTCGCAACCAGCGACGACGAAGATGAGGCGCCGCCGCCTTCCAAGCAGCAATCTTCGGCAAATGCGTCCGAAGAGAACCGTTCGAAGCAGCAGCGCAAGAGGAAGAGGATGAAGCtccaagaagaagaggaagaagaacaGGAAGAAGCGagggagaaggagaagaaggaggaagacaagaaaaagaagagaaagcacAAAGACAAGCAAGAAGAGAGATCTAACGAAGAAGAGGAACCGCCGCTGGAGGACGCCAAGCCAATTGGCGAACCAGTTAGGGTTACCGGAAAAGGAAGAGGCCGGAAAAAGCATTTTGAATCCTTCGAGTACGATGGAAACCAATACACGCTGGAGGACCCTATTCTTCTCACGCCTGAGGACAAAGACCAAAAGCCATACGTGGCGATTATTAAGGACATTACTCAATCCCTAAATGGCAGTGTGATGATCTCAGGGCAGTGGTTTTATCGTCCCGAAGAAGCTGAAAGAAAAGGCGGTGGCAGCTGGCAATCACGTGATACAAGGGAGCTGTTTTATAGTTTCCACCATGATGAGGTTCCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACATAAACAGCTTCCAAATCGTAAGCAGCATCCTGGGTTTATTGTGCAAAAGGTGTATGACACGGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGACGAGCTTGTTCAGAAAACTCTTCAACGTTTGGGTGAACTACCTGATATTGAGTCTGAAGAACCTGTTGCTGATCAGGAAGAtctgatgaaaaataaaagaatcttAAGGAAAAAGAGCATTTCACCTCTCGATGTTTCAAAGGAGGAGGAAACAACTCATAAGAGTGACCAGCCTTTGAAACCTGAAACACCAGCGAGTTGTGTAAATAATGCCTCAGAACATTATCGCATATTAGTGGATTTCAATGCACTAACAGGAGATACCCATCGTGACAAATGTTTGGAGAAGTTGCTTCAAAGCGTTCAATTCATGTTTAATTCtgatgacagtgtaaagaaGGAAGACAAAGGAAATGACAATTCTGATGCAAACAACAATGGAAGCAATAACAAAAGTTTAGAATTAGCAAATGAATGTAAAGACAAGGTTCAAAAGAGTTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTTCCCGCTGTAGTTGCTCTGGAAAAAGCTTCACATGAAACTTTTTCATCAGATTATCAAAAGTATAACCAAAAGCTACGGCAATTAGTATTTAATCTCAAGaaCAATGCAATCCTAGCACGCCGTCTATTAAATGGAGAGTTGGAACCttctaaaatattgaatatgaCACCCAATGAATTGAAGGAGGGCTTGACTGCTGAGGAAACATGCAAGAAGGAGCCTGATGAGTCACAGCAGATgcagATGACGGATGCACGATGCCGTAGATGCACAGAGTGTAAGGTGGGCTTGAGGGATATTATCCATGCAGGTCATGGTGACCGATATAAGCTGGAATGTATTGCCTGTGGTCACTCCTGGTATGCCTCCCGGGACGAGGTATCTACGCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGCACGGCGCCATGGGCCACTGCAAAATTTGAAGATGTTGAGAAGAAGCTGGTGAGCCCCCGTGAATCTGAAAACTCGGCCAATGACATCTTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTGGAGGCCCAGAAATCATTTGGCAAGTCTAAGAAAGATGAAAACGTCCAAGCTTCAAAACATGCTGACTAA 1848 0.4123 MGNRRFTQVATSDDEDEAPPPSKQQSSANASEENRSKQQRKRKRMKLQEEEEEEQEEAREKEKKEEDKKKKRKHKDKQEERSNEEEEPPLEDAKPIGEPVRVTGKGRGRKKHFESFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSLNGSVMISGQWFYRPEEAERKGGGSWQSRDTRELFYSFHHDEVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELPDIESEEPVADQEDLMKNKRILRKKSISPLDVSKEEETTHKSDQPLKPETPASCVNNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFMFNSDDSVKKEDKGNDNSDANNNGSNNKSLELANECKDKVQKSSKSFVWPDVAVPAVVALEKASHETFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKEGLTAEETCKKEPDESQQMQMTDARCRRCTECKVGLRDIIHAGHGDRYKLECIACGHSWYASRDEVSTLTIDASDSKRSVGTAPWATAKFEDVEKKLVSPRESENSANDIFKKTSEAYMPVLEAQKSFGKSKKDENVQASKHAD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3058 615 ProSiteProfiles BAH domain profile. 121 240 IPR001025 GO:0003682
Ssu5g3058 615 MobiDBLite consensus disorder prediction 363 385 - -
Ssu5g3058 615 Coils Coil 28 87 - -
Ssu5g3058 615 MobiDBLite consensus disorder prediction 596 615 - -
Ssu5g3058 615 Gene3D - 90 257 IPR043151 -
Ssu5g3058 615 MobiDBLite consensus disorder prediction 57 94 - -
Ssu5g3058 615 CDD BAH_plant_3 103 249 - -
Ssu5g3058 615 MobiDBLite consensus disorder prediction 598 615 - -
Ssu5g3058 615 ProSiteProfiles TFIIS central domain profile. 342 498 IPR003618 GO:0006351
Ssu5g3058 615 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 612 - -
Ssu5g3058 615 SUPERFAMILY Elongation factor TFIIS domain 2 337 471 IPR036575 GO:0006351
Ssu5g3058 615 MobiDBLite consensus disorder prediction 296 310 - -
Ssu5g3058 615 MobiDBLite consensus disorder prediction 34 50 - -
Ssu5g3058 615 Pfam Transcription factor S-II (TFIIS), central domain 338 489 IPR003618 GO:0006351
Ssu5g3058 615 Gene3D - 322 472 IPR036575 GO:0006351
Ssu5g3058 615 MobiDBLite consensus disorder prediction 296 320 - -
Ssu5g3058 615 Pfam BAH domain 122 238 IPR001025 GO:0003682
Ssu5g3058 615 SMART BAH_4 121 240 IPR001025 GO:0003682
Ssu5g3058 615 SMART mid_6 375 480 IPR003618 GO:0006351
Ssu5g3058 615 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 612 - -
Ssu5g3058 615 MobiDBLite consensus disorder prediction 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3058 Ssu-Chr5 78039401 78047671 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3058 - - gmx:100787670 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2867 2 89838932 89843861 Ssu5g3058 5 78039401 78047671 PCT