Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2867 ATGGTGAATCGACGACGCTTCAGTCGGGTGGCGACGAGCGACGATGAAGACGAACCACCGCGTCCACAACGCACGAGGAAGAGGATGAGGCTTCTAGAGGAGGAAGATAACGACAAcgagaatgaagaagaagaagaagaagtggtACCAGAACAGCCTCAGCCTGTGGAGGACGCTAAGCCCATTGGCCAGCCCGTTAGGTTTTCGGGAAAAGGAAGAGGCAGAAAGAAGCACTATGACTCCTTCGAATTCGATGGCATCCAATATACTCTCGAGGACCCTGTTCTTCTCGTACCCGAGGTAACAGGCCAAAAACCATATGTGGCAATTATTAAgGATATTACACAGGCTAATAATGGCAACGTGCTAGTGACGGGGCAGTGGTTTTATCGCCCTGAAGAAgctgagaaaaaaaatggtggaaACTGGCAATCATGTGATACGAGGGAGCTGTTTTATAGTTTCCACCGCGACAAGGTTCCTGCAGAGGCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAGCAGCTTCCTAAGCGTAAGGATCATCCTGGGTTTATTGTGCAGAAGGTGTATGACACTGTGGAAAGAAAACTCTGGAGGTTGTCTGATAAGGACTATGAGGATATTAAACAGCAAGAGATTGATGAGCTTGTTCAGAAGACTCTGCAACGTATTGGTGAGCTACTTGACATTGAGTCTGAGGAAGCCCCTGCTGATGAGGAGgaccaaatgaaaaataaaaaaagcttaaGGAGAAAGAGTGTTTCACCTCTTGATGTTTCGAAGGAGGAGGAAGAAACTCTTAAGAGTGAACAACATCCAAAGTCTGAAACACCAGCGAGTTGTGGAACTAATGCCTCAGAGTATTATCGCATATTGGTAAAATTCAATGCACTAACTGGAGATAGCCATCGTGACAAATGGTTGGAGAGGTTGCTTCAACACATTCAGTACATGTGTGATTCTAATGATAGCAAAGAAAGAGACAAAGGATTAGGAAATGTCAATTCTGATGAAACCAACAGTGGAAGCAAGAATAGAAGTTCAGAATCAGCAAATGATTGTCAAGTCAGGGATCACAAGAGTTCCAAGTCTTTTATCTGGCCAGATGCTGCTGTTTCAGCCATAGTTGCTCTCGAAAAAGCTTCACATGATGTTCTCTCATCAGATTCTATGAAGTACAACCAAAAGTTGCGGCAATTAGCTTTTAATCTCCAGAAAAATGCAGTGTTAGCACGCCATTTATTAAATGGGGAGTTGGAaccttcaaaaatattaaatatgacaCCCAATGAATTAAAGGAGGGTTTGGTTGCTGAGGAAAGAAGCAAGGAGGAGCCTGACGAGACCCAGCACGTGCAAATGATAGATGCCCGCTGTTCAAAATGCATGGATTGTAAGGTGGGCCTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGTCTATGCCGACCATAGATGCATCAGATTCAAAGGAACTCATGGGCACAGCGCCGTAG 1569 0.4251 MVNRRRFSRVATSDDEDEPPRPQRTRKRMRLLEEEDNDNENEEEEEEVVPEQPQPVEDAKPIGQPVRFSGKGRGRKKHYDSFEFDGIQYTLEDPVLLVPEVTGQKPYVAIIKDITQANNGNVLVTGQWFYRPEEAEKKNGGNWQSCDTRELFYSFHRDKVPAEAVMHKCVVHFVPIHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDELVQKTLQRIGELLDIESEEAPADEEDQMKNKKSLRRKSVSPLDVSKEEEETLKSEQHPKSETPASCGTNASEYYRILVKFNALTGDSHRDKWLERLLQHIQYMCDSNDSKERDKGLGNVNSDETNSGSKNRSSESANDCQVRDHKSSKSFIWPDAAVSAIVALEKASHDVLSSDSMKYNQKLRQLAFNLQKNAVLARHLLNGELEPSKILNMTPNELKEGLVAEERSKEEPDETQHVQMIDARCSKCMDCKVGLREIIQAGNNERYQLECVSCGHSWYASRDEVSMPTIDASDSKELMGTAP 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2867 522 Gene3D - 70 295 IPR043151 -
Ssu2g2867 522 MobiDBLite consensus disorder prediction 36 52 - -
Ssu2g2867 522 MobiDBLite consensus disorder prediction 1 74 - -
Ssu2g2867 522 SMART BAH_4 87 206 IPR001025 GO:0003682
Ssu2g2867 522 MobiDBLite consensus disorder prediction 327 361 - -
Ssu2g2867 522 Gene3D - 327 439 IPR036575 GO:0006351
Ssu2g2867 522 ProSiteProfiles BAH domain profile. 87 206 IPR001025 GO:0003682
Ssu2g2867 522 MobiDBLite consensus disorder prediction 237 286 - -
Ssu2g2867 522 MobiDBLite consensus disorder prediction 8 35 - -
Ssu2g2867 522 Pfam BAH domain 88 202 IPR001025 GO:0003682
Ssu2g2867 522 MobiDBLite consensus disorder prediction 339 355 - -
Ssu2g2867 522 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 522 - -
Ssu2g2867 522 CDD BAH_plant_3 69 215 - -
Ssu2g2867 522 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 522 - -
Ssu2g2867 522 SUPERFAMILY Elongation factor TFIIS domain 2 303 438 IPR036575 GO:0006351
Ssu2g2867 522 SMART mid_6 306 447 IPR003618 GO:0006351
Ssu2g2867 522 MobiDBLite consensus disorder prediction 244 277 - -
Ssu2g2867 522 Pfam Transcription factor S-II (TFIIS), central domain 304 455 IPR003618 GO:0006351
Ssu2g2867 522 ProSiteProfiles TFIIS central domain profile. 308 465 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2867 Ssu-Chr2 89838932 89843861 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2867 - - gmx:100776280 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2867 2 89838932 89843861 Ssu2g2867 2 89838932 89843861 ECH
Ssu2g2867 2 89838932 89843861 Ssu5g3058 5 78039401 78047671 PCT