Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3043 ATGGCTGTGCATGATGACTGCAAACTGAGGTTTCAAGAGCTTAAAGCAAAGAGGAGCTACAGGTTCATTGTGTTCAAAATTGAAGAACAGCAAGTGGTGGTTGAGAAATTGGGGGACCCCTCGGAAAGTTATGAGGATTTTATGGCCAGTTTTCCAGCTGATGAGTGTCGTTATGCCGTCTATGATTTTGATTTCACAACTGATGAGAACTGCCAAAAAAGCAAGATCTTCTTCATTGCATGGTCACCAGATACCTCAAAGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGATAGATTCAAGAGAGAATTGGATGGCATTCAAGTTGATATGCAAGCAACTGATCCGAGTGAGATGAGCTTGGACCTTGTGAAAGCGCGAGCCATCTAA 393 0.4326 MAVHDDCKLRFQELKAKRSYRFIVFKIEEQQVVVEKLGDPSESYEDFMASFPADECRYAVYDFDFTTDENCQKSKIFFIAWSPDTSKVRMKMVYASSKDRFKRELDGIQVDMQATDPSEMSLDLVKARAI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3043 130 Gene3D Severin 1 130 IPR029006 -
Ssu5g3043 130 CDD ADF_cofilin_like 1 129 IPR017904 GO:0015629|GO:0030042
Ssu5g3043 130 ProSiteProfiles ADF-H domain profile. 1 130 IPR002108 GO:0003779
Ssu5g3043 130 Pfam Cofilin/tropomyosin-type actin-binding protein 7 127 IPR002108 GO:0003779
Ssu5g3043 130 PANTHER COFILIN-RELATED 1 130 IPR017904 GO:0015629|GO:0030042
Ssu5g3043 130 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 1 130 - -
Ssu5g3043 130 SMART adf_2 5 130 IPR002108 GO:0003779
Ssu5g3043 130 SUPERFAMILY Actin depolymerizing proteins 2 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3043 Ssu-Chr5 77870147 77870934 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3043 K05765 - gmx:100790487 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2855 2 89662060 89662672 Ssu5g3043 5 77870147 77870934 PCT