Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3039 ATGGCCAAGGTTTACCCTCAGGAACCCACATCTCCCCAGTGTCTCACCTCTGAAAGAGAAACTTACACTCTATGGTTGAAATCACTTGTCTTCCACTCCAATGGATGCACTGTCTATGACTCAAACGGTGACATCGTTTATCGAGTTGATAACTATGACAGAAAGGGTAGAAGGGAAGTTAACCTCATGGATCTACGAGGCAAAGTTCTCTGCACCATAAAGAAGAGATTACTAGCTTTTGGATGCTGGGAAGGCCACAGATGCGTCAGTTCTAGTTTTAGTAGCCAGGAACAACCGTGGTTTCAAGTGAAAAGATGTAATCAAATGATCAAAGGGAAAGTAGCTTGCCAAATTTCTGTGGGGTGCCAAAAGTACAGCATAGAGAGAATCAGTGGCAAAGCAGAAGCATTTAGGATAGTGAACACAGATGGACAAATAGTTGCCGAGGCAAAGCAAAAGCACTCACCCTCAGGAGTTGTACTGAGCAACGATGTTCTAACCTTGGATTTGGCTGCGGGCACAGATCATTCCCTCATAATGGCTTTAGTCACAGTATACGGATTGATATGCGGAATGATGTAA 582 0.4399 MAKVYPQEPTSPQCLTSERETYTLWLKSLVFHSNGCTVYDSNGDIVYRVDNYDRKGRREVNLMDLRGKVLCTIKKRLLAFGCWEGHRCVSSSFSSQEQPWFQVKRCNQMIKGKVACQISVGCQKYSIERISGKAEAFRIVNTDGQIVAEAKQKHSPSGVVLSNDVLTLDLAAGTDHSLIMALVTVYGLICGMM 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3039 193 Pfam LURP-one-related 10 185 IPR007612 -
Ssu5g3039 193 SUPERFAMILY Tubby C-terminal domain-like 10 190 IPR025659 -
Ssu5g3039 193 PANTHER PROTEIN LURP-ONE-RELATED 4 2 191 - -
Ssu5g3039 193 Gene3D - 10 192 IPR038595 -
Ssu5g3039 193 PANTHER - 2 191 IPR007612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3039 Ssu-Chr5 77808296 77809097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3039 - - pvu:PHAVU_002G287800g 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2848 2 89551666 89552535 Ssu5g3039 5 77808296 77809097 PCT