Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3029 ATGGCGTTGCAGGAGAGGCTAGACAAGTTCAAGAAGCAACAGGAGAAGTGCCATTCGACGCTGTCGAGCATTGCAGCAAGCAAGGCCGCGAGCCAAAAATCCGCCGCACATGGCTCAGCCTCGGCCAATGGAAGAAACGCGGTCCCTGCCGTTAAGTTTTCGAACGACACAGAGAGGCTGCAGCATATTAACAGCATACGCAAAGCGCCCGTGGGTGCTCAGATGAAGCGTGTTATTGATCTCCTTCTAGAGACACGTCAAGCTTTAACACCAGAGCAGATAAATGAGGCATGCTATGTCGACATGAAGGCTAACAAAGATGTCTTTGAGAATCTGAGGAAAAACCCGAAAGTGAACTATGATGGGCAACGATTCTCTTACAAGTCAAAGTATGGTCTTAAGGACAAAACTGAGCTTCTTCAACTGATACGAAAGTATCCTGAGGGCCTTGCTGTTATTGACCTAAAGGATGCTTACCCCACTGTGATGGAAGACTTGCAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTCTCCAACTTTGATTCGCAGGAAGACATTGCCTACCCTAACGACCCCAAAGTGCACATTAAGGTGGATGATGATCTAAAACAGCTTTTCCGGAGTATTGAATTGCCTCGTGATATGATTGATATAGAAAAGGATCTTCAAAAGAATGGAATGAAGCCCGCTACCAACACTGCGAAGAGGAGGAGTGCAGCACAAATTCAAGGCATTTCTTCCAAGCCCAAGcctaagaagaagaagagtgaAATCAGCAAGAGGACTAAGCTGACCAATGCCCATCTTCCAGAGCTTTTTCAGAATTTAAACAGTTCCTGA 843 0.4567 MALQERLDKFKKQQEKCHSTLSSIAASKAASQKSAAHGSASANGRNAVPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQALTPEQINEACYVDMKANKDVFENLRKNPKVNYDGQRFSYKSKYGLKDKTELLQLIRKYPEGLAVIDLKDAYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPKVHIKVDDDLKQLFRSIELPRDMIDIEKDLQKNGMKPATNTAKRRSAAQIQGISSKPKPKKKKSEISKRTKLTNAHLPELFQNLNSS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3029 280 PIRSF TFIIE-beta 1 279 IPR016656 GO:0005673|GO:0006367
Ssu5g3029 280 Pfam TFA2 Winged helix domain 2 134 191 IPR040501 -
Ssu5g3029 280 Pfam TFIIE beta subunit core domain 73 131 IPR003166 GO:0006367
Ssu5g3029 280 PANTHER BNAA02G21830D PROTEIN 1 279 - -
Ssu5g3029 280 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 279 IPR016656 GO:0005673|GO:0006367
Ssu5g3029 280 MobiDBLite consensus disorder prediction 227 246 - -
Ssu5g3029 280 MobiDBLite consensus disorder prediction 226 280 - -
Ssu5g3029 280 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 59 134 IPR003166 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3029 Ssu-Chr5 77709912 77712529 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3029 K03137 - gmx:100802433 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2845 2 89482659 89485543 Ssu5g3029 5 77709912 77712529 PCT