Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2391 ATGGCAAGTCAAAGCGGTGCCTCTCGAAGGAGTATTTCGTCGACGAAGAAAGCCTCTGAATCAGGAGTGCCTCACGCTGCTTCTCGAAAATCAATTTCGTCTTCGCGACCTCTGGCATTGACAGGAGAGCGGACAGTAAAATCATTGCGACTTACAAAGGCCCTGACAGTACCTGAAACAACAACTGTCTATGAAGCTTGCCGTCGGATGGCTGCCCGTAGAGTGGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAGCAAGAGTTGTTGCCAAAGAGATTAATCTTGAAGACACACCAGTTTCCAAAGTTATGACAAGGAATCCGGTATTTGTCCTTTCTGAAACTCTTGCTGTGGAAGCCCTCCAAAAGATGGTGCAAGGGAAATTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTTTGGCTTTACTAGACATAGCAAAGTGTCTGTATGATGCCATTGCCCGTATGGAGAGGGCAACTGAGAAAGGAAAAGCAATTGCAGCAGCTGTTGAAGGAGTTGAAAAACACTGGGGAACATCAGACTCCAATACATCATTCATTGAGACTCTTCGGGAGCAGATATTCAAGCCATCATTGTCTACAATCATTCCTGAGAATTCAAAGTTTGTAACAGTTTCACCAACAGACTCAGCTCTGGCAACAACAAGGAAGATGGTTGAATTTCATGCAAGTTGTGCTGTTGTGACAGTTAATGGCAAACCTCATGGCATCTTTACTTCAAAGGATATCTTGATGCGAGTAATTGCACAACATCTTTCTCCAGAGTCAACTCCCGTTGAGAAgGTCATGACTCCAAATCCAGAATGCGTAGTAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCTGTGGTTGATAGAGATGGCAGCGTAGTTGCTGTGGTCGATGTAATTCATGTCACTCATGCTGCTGTGGCGACAGTAAGTCAGGTTGGAAACAATGAAGCTGCCACCTCCTTGATGCAAAGATTTTGGGATTCAGCCATGGCCTTAACTccaaatgatgatgatgatgatactCGAAGTGAGAGTTCCTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCGTTCCTTATCTTTCATCAAGCATGCCCAATACATTTTCCTTCAAAATACAAGATAAGAAGGGCAGAATGCACAGATTCACATGTGATACCCGGAGCATGACGGAGGTTATAACTTCAATCCTTCAGAGACTTGGTGATGATATTGATCCTAACAACATTCCCCAAATTCTGTATGAAGATGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCGGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGGGGTTGAAATTGCATTTAGACTACGCAGGACCACGTGGTAATGTGAAAGGTTCTCGTTCAGGAAATTATGCTTATTCAGATGCATGGGCCTCGGCATATAGTGCCGTTGCTGCTGGAGCTGCACTTGTTGCTGGCTTAGGCCTATTAACGTACTTGAAGCGAGTTTGA 1590 0.4352 MASQSGASRRSISSTKKASESGVPHAASRKSISSSRPLALTGERTVKSLRLTKALTVPETTTVYEACRRMAARRVDALLLTDSNALLCGILTDKDIAARVVAKEINLEDTPVSKVMTRNPVFVLSETLAVEALQKMVQGKFRHLPVVENGEVLALLDIAKCLYDAIARMERATEKGKAIAAAVEGVEKHWGTSDSNTSFIETLREQIFKPSLSTIIPENSKFVTVSPTDSALATTRKMVEFHASCAVVTVNGKPHGIFTSKDILMRVIAQHLSPESTPVEKVMTPNPECVVIDTPIVDALHTMHDGKFLHLPVVDRDGSVVAVVDVIHVTHAAVATVSQVGNNEAATSLMQRFWDSAMALTPNDDDDDTRSESSLKVASEGGETGRSVPYLSSSMPNTFSFKIQDKKGRMHRFTCDTRSMTEVITSILQRLGDDIDPNNIPQILYEDEDHDKVVLASDSDLAAAVDHARTAGLKGLKLHLDYAGPRGNVKGSRSGNYAYSDAWASAYSAVAAGAALVAGLGLLTYLKRV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2391 529 CDD CBS_pair_MUG70_1 51 167 - -
Ssu1g2391 529 ProSiteProfiles CBS domain profile. 283 344 IPR000644 -
Ssu1g2391 529 ProSiteProfiles PB1 domain profile. 396 483 IPR000270 GO:0005515
Ssu1g2391 529 CDD PB1_MUG70 399 483 - -
Ssu1g2391 529 ProSiteProfiles CBS domain profile. 215 275 IPR000644 -
Ssu1g2391 529 PANTHER CBS/OCTICOSAPEPTIDE/PHOX/BEMP1 (PB1) DOMAIN PROTEIN 21 517 - -
Ssu1g2391 529 ProSiteProfiles CBS domain profile. 116 173 IPR000644 -
Ssu1g2391 529 SUPERFAMILY CBS-domain pair 43 159 IPR046342 -
Ssu1g2391 529 SMART cbs_1 286 334 IPR000644 -
Ssu1g2391 529 SMART cbs_1 119 163 IPR000644 -
Ssu1g2391 529 SMART cbs_1 221 268 IPR000644 -
Ssu1g2391 529 SMART cbs_1 53 101 IPR000644 -
Ssu1g2391 529 ProSiteProfiles CBS domain profile. 50 110 IPR000644 -
Ssu1g2391 529 SUPERFAMILY CAD & PB1 domains 390 480 - -
Ssu1g2391 529 Gene3D - 398 480 - -
Ssu1g2391 529 Pfam PB1 domain 398 481 IPR000270 GO:0005515
Ssu1g2391 529 SUPERFAMILY CBS-domain pair 221 333 IPR046342 -
Ssu1g2391 529 SMART PB1_new 398 483 IPR000270 GO:0005515
Ssu1g2391 529 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 21 517 - -
Ssu1g2391 529 MobiDBLite consensus disorder prediction 375 391 - -
Ssu1g2391 529 Pfam CBS domain 112 155 IPR000644 -
Ssu1g2391 529 Pfam CBS domain 219 265 IPR000644 -
Ssu1g2391 529 Pfam CBS domain 51 99 IPR000644 -
Ssu1g2391 529 Pfam CBS domain 279 329 IPR000644 -
Ssu1g2391 529 Gene3D - 23 181 IPR046342 -
Ssu1g2391 529 Gene3D - 192 345 IPR046342 -
Ssu1g2391 529 MobiDBLite consensus disorder prediction 1 34 - -
Ssu1g2391 529 MobiDBLite consensus disorder prediction 360 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2391 Ssu-Chr1 66471678 66478001 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2391 - - gmx:100785816 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2391 1 66471678 66478001 Ssu5g3012 5 77344083 77349674 PCT